Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   FFA26_RS01715 Genome accession   NZ_CP040500
Coordinates   351943..353322 (+) Length   459 a.a.
NCBI ID   WP_003649432.1    Uniprot ID   A0AB36X3S0
Organism   Lactobacillus paragasseri JV-V03     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 346943..358322
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FFA26_RS01685 - 347596..347853 (+) 258 WP_035430046.1 hypothetical protein -
  FFA26_RS01690 - 347855..348040 (+) 186 WP_003649437.1 hypothetical protein -
  FFA26_RS01695 - 348059..348736 (+) 678 WP_035430044.1 2,3-diphosphoglycerate-dependent phosphoglycerate mutase -
  FFA26_RS01700 - 348846..349781 (+) 936 WP_003649435.1 AAA family ATPase -
  FFA26_RS01705 pepC 349848..351197 (-) 1350 WP_003649434.1 aminopeptidase C -
  FFA26_RS01710 - 351392..351943 (+) 552 WP_003649433.1 dUTP diphosphatase -
  FFA26_RS01715 radA 351943..353322 (+) 1380 WP_003649432.1 DNA repair protein RadA Machinery gene
  FFA26_RS01720 gltX 353404..354903 (+) 1500 WP_003649431.1 glutamate--tRNA ligase -
  FFA26_RS01725 cysS 354997..356409 (+) 1413 WP_035430042.1 cysteine--tRNA ligase -
  FFA26_RS01730 - 356402..356845 (+) 444 WP_003649429.1 Mini-ribonuclease 3 -
  FFA26_RS01735 rlmB 356832..357587 (+) 756 WP_003649428.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 50141.73 Da        Isoelectric Point: 7.6588

>NTDB_id=364704 FFA26_RS01715 WP_003649432.1 351943..353322(+) (radA) [Lactobacillus paragasseri JV-V03]
MAKVKTRYKCRNCGYISASYLGRCPNCGAWNQFEEETQEVKKVSTKATASRLMTKIGNNDPVKLNEVKAEKEKRIVTPFE
ELNRVLGGGIVPGSLVLIGGDPGIGKSTLMLQITGALAKEHSVLYVSGEESASQIKMRADRLGVSNSGILLYPETNMQNI
REQIDEIKPDFLVIDSIQTMNEPSLDSMVGSASQVREVTSELMKIAKNDQITTFVIGHVTKEGAIAGPKIMEHMVDTVLY
FEGDGHHSYRILRSVKNRFGAANEIGMFEMKNEGLTEVNNPSAIFLDERLPNSTGSAVVVSLEGTRPLLADIQALVTPTA
FGYAKRTTSGLDFNRVALLLAVLEKRGNLMLQNQDAFLTATGGIKLNEPAIDLAICMAVASSYKNKEISSTDCFVGEVGL
TGEIRRVNQIEARVKEAAKVGFKRIFIPKHNLTTELKNNSEIEVIGVASLPQALKLVFN

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=364704 FFA26_RS01715 WP_003649432.1 351943..353322(+) (radA) [Lactobacillus paragasseri JV-V03]
ATGGCAAAAGTTAAAACACGTTATAAGTGCCGTAATTGTGGTTATATTTCAGCTTCTTATTTAGGTAGATGCCCTAATTG
CGGTGCCTGGAATCAATTTGAAGAAGAAACGCAAGAAGTAAAAAAAGTATCAACCAAGGCAACTGCTAGTCGCTTAATGA
CTAAAATTGGAAATAATGATCCAGTAAAATTAAATGAAGTAAAAGCTGAAAAAGAAAAAAGAATTGTAACTCCTTTTGAA
GAACTAAATCGAGTTCTAGGAGGCGGAATAGTTCCGGGTTCTTTAGTTTTAATTGGTGGAGATCCTGGAATTGGTAAGTC
AACTTTGATGCTTCAAATTACCGGTGCTTTAGCTAAAGAGCATAGTGTTTTATATGTTTCAGGAGAAGAGTCGGCTAGTC
AGATAAAGATGCGAGCTGATCGTTTAGGTGTAAGCAACAGCGGAATTTTGCTTTATCCTGAAACCAATATGCAGAATATT
CGTGAACAGATTGATGAAATTAAGCCGGATTTTTTGGTAATCGACTCTATCCAAACAATGAATGAGCCATCTCTTGATTC
GATGGTTGGATCAGCTTCTCAAGTTCGAGAAGTTACGAGTGAGTTAATGAAGATTGCCAAGAATGATCAGATTACTACTT
TTGTTATTGGACATGTGACTAAAGAAGGTGCAATTGCTGGCCCCAAGATTATGGAACATATGGTTGATACTGTCCTTTAC
TTTGAAGGGGATGGCCACCATTCATATCGAATTTTAAGGTCTGTCAAAAATCGTTTTGGTGCAGCTAATGAGATTGGTAT
GTTTGAAATGAAAAATGAAGGACTAACAGAAGTAAATAATCCTTCAGCGATTTTCTTAGACGAACGTTTACCAAATTCTA
CAGGTTCAGCAGTTGTCGTTTCGCTTGAAGGAACAAGGCCACTTCTAGCCGATATTCAAGCTTTGGTAACTCCAACTGCC
TTTGGTTATGCTAAAAGAACTACGTCGGGGTTAGATTTCAATCGTGTAGCCTTATTATTAGCGGTTTTAGAAAAACGTGG
TAACTTAATGTTACAAAATCAAGATGCATTTTTAACGGCAACAGGTGGAATTAAATTAAATGAGCCAGCGATTGACTTGG
CAATTTGTATGGCTGTAGCTTCTAGTTATAAAAATAAAGAAATTTCTTCTACTGATTGTTTTGTAGGCGAAGTTGGCTTA
ACCGGTGAAATTAGAAGAGTTAATCAAATTGAAGCTAGAGTTAAAGAAGCTGCTAAAGTAGGCTTTAAGCGAATTTTTAT
TCCAAAACATAATTTAACTACTGAGCTTAAGAATAATTCTGAGATTGAAGTAATTGGTGTGGCAAGTTTGCCGCAAGCTT
TAAAACTGGTTTTTAATTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(364-431)

AAA domain (AAA_25)

(68-223)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

60.044

99.782

0.599
  radA Streptococcus pneumoniae D39

60.044

99.782

0.599
  radA Streptococcus pneumoniae R6

60.044

99.782

0.599
  radA Streptococcus pneumoniae TIGR4

60.044

99.782

0.599
  radA Streptococcus mitis NCTC 12261

60.044

99.782

0.599
  radA Streptococcus mitis SK321

60.044

99.782

0.599
  radA Bacillus subtilis subsp. subtilis str. 168

55.921

99.346

0.556

Multiple sequence alignment