Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   FE931_RS05155 Genome accession   NZ_CP040468
Coordinates   1204148..1205518 (+) Length   456 a.a.
NCBI ID   WP_005858247.1    Uniprot ID   A0A223HK93
Organism   Parabacteroides distasonis strain CavFT-hAR46     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1199148..1210518
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FE931_RS05140 (FE931_05140) - 1199490..1200362 (-) 873 WP_005858254.1 arginase family protein -
  FE931_RS05145 (FE931_05145) - 1200481..1202787 (+) 2307 WP_005858252.1 GH92 family glycosyl hydrolase -
  FE931_RS21585 - 1202848..1202982 (-) 135 WP_005858250.1 hypothetical protein -
  FE931_RS05150 (FE931_05150) - 1203116..1204114 (+) 999 WP_005858249.1 isoaspartyl peptidase/L-asparaginase family protein -
  FE931_RS05155 (FE931_05155) radA 1204148..1205518 (+) 1371 WP_005858247.1 DNA repair protein RadA Machinery gene
  FE931_RS05160 (FE931_05160) - 1205532..1207136 (+) 1605 WP_005858245.1 NAD(P)/FAD-dependent oxidoreductase -
  FE931_RS05165 (FE931_05165) - 1207154..1208275 (+) 1122 WP_009274810.1 glycoside hydrolase family 43 protein -
  FE931_RS05170 (FE931_05170) - 1208269..1208658 (-) 390 WP_009274811.1 hypothetical protein -
  FE931_RS05175 (FE931_05175) - 1208671..1209480 (-) 810 WP_009274812.1 peptidylprolyl isomerase -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 49827.63 Da        Isoelectric Point: 6.6073

>NTDB_id=364692 FE931_RS05155 WP_005858247.1 1204148..1205518(+) (radA) [Parabacteroides distasonis strain CavFT-hAR46]
MAKTKTVYVCSNCGADSPKWLGKCPNCGEWNTYVEEIVTKEPAVKRPVPGIMEGNKIRPVLLRDITTEEEARIDLKDDEL
NRVLGGGLVKGSLVLIGGEPGIGKSTLVLQTVLGLTGLKTLYVSGEESSRQLKLRADRLSHDNPNCFILCETHLEQIFTQ
AANIQPDLMIIDSIQTIFTEVVESSPGSVSQVRECSAAILKYAKESGVPVLLIGHINKEGSIAGPKVLEHIVDTVLQFEG
DQHYMYRILRSIKNRFGSTAELGIYEMRQNGLREVSNPSELLLTQNHEGLSGVAIAAAIEGVRPFLIETQALVSSAVYGT
PQRSATGFDLRRMNMLLAVLEKRAGFKLIQKDVFLNIAGGLKVNDPAIDLAVISSILSSSLDISIEPGVCMAGEVGLSGE
IRPVNRIEQRILEAEKLGFSRIIIPHNNLKGFDTAKSKIQIVQVKKVEEAFRQLFG

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=364692 FE931_RS05155 WP_005858247.1 1204148..1205518(+) (radA) [Parabacteroides distasonis strain CavFT-hAR46]
ATGGCGAAAACAAAAACCGTATATGTCTGCTCTAACTGTGGCGCTGATTCCCCGAAATGGCTGGGTAAATGCCCGAATTG
TGGGGAGTGGAACACTTATGTAGAGGAGATCGTAACAAAGGAGCCTGCCGTGAAGCGGCCAGTTCCCGGTATTATGGAGG
GCAATAAGATCCGTCCGGTGTTATTGCGTGATATAACGACGGAAGAGGAGGCCCGTATCGATTTAAAAGATGATGAATTA
AATAGGGTCCTCGGCGGAGGCTTGGTGAAGGGCTCTTTGGTCTTGATCGGTGGAGAGCCGGGAATCGGAAAATCTACCTT
GGTCTTGCAAACCGTGTTGGGCTTGACAGGCTTGAAAACCCTATATGTCTCGGGCGAGGAGAGCAGTCGCCAGTTGAAAC
TCCGGGCGGACCGATTATCGCATGATAATCCGAACTGTTTCATCCTATGCGAGACGCATCTGGAACAGATTTTTACGCAA
GCGGCCAATATCCAGCCGGACTTGATGATCATAGATTCCATACAAACCATCTTTACGGAAGTCGTGGAATCTTCCCCCGG
CAGTGTTTCCCAAGTACGTGAGTGTAGTGCCGCTATCTTGAAATACGCCAAGGAAAGCGGTGTCCCGGTCTTATTGATCG
GCCATATCAATAAGGAAGGCAGTATCGCCGGTCCGAAGGTATTGGAGCATATCGTGGATACGGTGTTGCAGTTTGAGGGC
GATCAGCATTATATGTATCGTATCCTGCGGAGCATCAAGAACCGTTTTGGCAGTACGGCGGAACTAGGGATTTACGAGAT
GCGCCAGAACGGGCTTCGTGAGGTCAGCAATCCATCCGAGTTATTATTAACCCAGAATCATGAGGGACTGAGCGGTGTCG
CCATCGCCGCCGCTATCGAGGGGGTACGTCCTTTCTTGATCGAGACGCAAGCCTTGGTCAGCTCGGCGGTTTACGGTACG
CCGCAACGTAGCGCCACCGGATTCGATTTACGCCGAATGAATATGTTATTGGCAGTATTGGAGAAAAGGGCGGGTTTTAA
GTTGATCCAGAAAGATGTTTTCCTGAATATCGCCGGAGGTTTGAAAGTGAATGATCCGGCTATCGATTTGGCGGTAATCA
GTTCCATCCTTTCTTCTAGCTTGGATATCAGCATCGAGCCGGGTGTTTGTATGGCTGGCGAGGTGGGCTTGTCCGGAGAG
ATCCGTCCGGTCAACCGTATTGAGCAACGTATCTTGGAGGCGGAGAAGCTGGGTTTCTCCCGGATTATCATTCCGCATAA
TAATCTAAAAGGTTTCGATACGGCGAAGAGCAAGATTCAAATCGTACAGGTAAAGAAAGTGGAGGAAGCCTTTCGGCAAC
TATTCGGTTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(342-428)

AAA domain (AAA_25)

(69-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A223HK93

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

52.838

100

0.531
  radA Streptococcus mitis NCTC 12261

49.234

100

0.493
  radA Streptococcus pneumoniae Rx1

49.015

100

0.491
  radA Streptococcus pneumoniae D39

49.015

100

0.491
  radA Streptococcus pneumoniae R6

49.015

100

0.491
  radA Streptococcus pneumoniae TIGR4

49.015

100

0.491
  radA Streptococcus mitis SK321

49.015

100

0.491

Multiple sequence alignment