Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   FFA43_RS06055 Genome accession   NZ_CP040464
Coordinates   1169390..1170733 (+) Length   447 a.a.
NCBI ID   WP_059430776.1    Uniprot ID   A0A9W5F036
Organism   Campylobacter hyointestinalis subsp. hyointestinalis strain S12     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 1163996..1190559 1169390..1170733 within 0


Gene organization within MGE regions


Location: 1163996..1190559
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FFA43_RS06025 (FFA43_06025) - 1164633..1165196 (-) 564 WP_034963891.1 DedA family protein -
  FFA43_RS06030 (FFA43_06030) - 1165205..1165798 (-) 594 WP_059430779.1 lipid-binding SYLF domain-containing protein -
  FFA43_RS06035 (FFA43_06035) rny 1165808..1167361 (-) 1554 WP_059430778.1 ribonuclease Y -
  FFA43_RS06040 (FFA43_06040) - 1167294..1167923 (-) 630 WP_059427777.1 5-formyltetrahydrofolate cyclo-ligase -
  FFA43_RS06045 (FFA43_06045) - 1167974..1168519 (+) 546 WP_059427778.1 TlpA disulfide reductase family protein -
  FFA43_RS06050 (FFA43_06050) ftsY 1168519..1169403 (+) 885 WP_059430777.1 signal recognition particle-docking protein FtsY -
  FFA43_RS06055 (FFA43_06055) radA 1169390..1170733 (+) 1344 WP_059430776.1 DNA repair protein RadA Machinery gene
  FFA43_RS06060 (FFA43_06060) - 1170885..1171088 (-) 204 WP_059430775.1 hypothetical protein -
  FFA43_RS09410 - 1171230..1171355 (-) 126 WP_258058179.1 hypothetical protein -
  FFA43_RS06065 (FFA43_06065) - 1173422..1174516 (-) 1095 WP_059430774.1 cytochrome b/b6 domain-containing protein -
  FFA43_RS06070 (FFA43_06070) - 1174509..1175024 (-) 516 WP_059434799.1 diheme cytochrome c -
  FFA43_RS06075 (FFA43_06075) - 1175034..1175447 (-) 414 WP_059426758.1 DUF1924 domain-containing protein -
  FFA43_RS06080 (FFA43_06080) - 1176204..1176446 (+) 243 WP_059430772.1 AlpA family transcriptional regulator -
  FFA43_RS06085 (FFA43_06085) - 1176439..1177284 (+) 846 WP_175403358.1 ATP-binding protein -
  FFA43_RS09315 - 1177803..1178420 (+) 618 WP_059430770.1 relaxase/mobilization nuclease domain-containing protein -
  FFA43_RS09320 - 1178417..1178731 (+) 315 WP_254678441.1 hypothetical protein -
  FFA43_RS09325 - 1178809..1179216 (+) 408 WP_059430768.1 hypothetical protein -
  FFA43_RS09330 - 1179198..1179425 (+) 228 WP_059430767.1 hypothetical protein -
  FFA43_RS06095 (FFA43_06095) - 1179445..1180002 (-) 558 WP_059430766.1 HepT-like ribonuclease domain-containing protein -
  FFA43_RS06100 (FFA43_06100) - 1179995..1180367 (-) 373 Protein_1211 nucleotidyltransferase domain-containing protein -
  FFA43_RS06105 (FFA43_06105) - 1181515..1182564 (-) 1050 WP_254678442.1 site-specific integrase -
  FFA43_RS09335 - 1182588..1182758 (-) 171 WP_254678443.1 hypothetical protein -
  FFA43_RS06115 (FFA43_06115) - 1183345..1183761 (-) 417 WP_059426757.1 Hpt domain-containing protein -
  FFA43_RS06120 (FFA43_06120) panB 1183847..1184641 (+) 795 WP_059430765.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  FFA43_RS06125 (FFA43_06125) - 1184625..1184939 (+) 315 WP_059426755.1 rhodanese-like domain-containing protein -
  FFA43_RS06130 (FFA43_06130) ruvB 1184942..1185949 (+) 1008 WP_034963926.1 Holliday junction branch migration DNA helicase RuvB -
  FFA43_RS06135 (FFA43_06135) - 1185942..1187027 (+) 1086 WP_059430764.1 AI-2E family transporter -
  FFA43_RS06140 (FFA43_06140) - 1187027..1188103 (+) 1077 WP_059429752.1 ABC transporter permease -
  FFA43_RS06145 (FFA43_06145) - 1188145..1188840 (+) 696 WP_059426761.1 ABC transporter ATP-binding protein -
  FFA43_RS06150 (FFA43_06150) - 1188830..1189732 (+) 903 WP_059426752.1 MlaD family protein -
  FFA43_RS06155 (FFA43_06155) - 1189729..1190304 (+) 576 WP_059430763.1 ABC-type transport auxiliary lipoprotein family protein -

Sequence

Protein


Download         Length: 447 a.a.        Molecular weight: 49033.70 Da        Isoelectric Point: 7.1363

>NTDB_id=364685 FFA43_RS06055 WP_059430776.1 1169390..1170733(+) (radA) [Campylobacter hyointestinalis subsp. hyointestinalis strain S12]
MAKTKTIFECEACGNQQSKWMGKCPGCGAWESFVELSSEQIKVINEISKISNSPSSKAKAITDIKIEEISRRTTGDVELD
IVLGGGLVDGSLVLIGGSPGIGKSTLLLKIASNLAEFGENVLYVSGEESESQIKLRANRLNANSKNLYLLTEINLDNILA
EISKKEYKTLVVDSIQTLYSDKISSAPGSVSQVREITFELMRLAKSKNICVFIIGHITKEGSIAGPRILEHMVDVVLYFE
GDSSMELRLLRGFKNRFGSTSEVGIFEMSKFGLISAKDATSKFFTRGDAVSGSAITVTMEGSRALIVEIQALVCESSYPK
RSSTGFDKNRLDMILALLERKLEIPLGHYDVFINVTGGVKINETACDLAVVAAIISSFRNRPISKESIFIGELSLNGEIR
DIFNLDARLKEASMQKFKNIIAPSKPIEKSNLKIFVAKEISQVIEWM

Nucleotide


Download         Length: 1344 bp        

>NTDB_id=364685 FFA43_RS06055 WP_059430776.1 1169390..1170733(+) (radA) [Campylobacter hyointestinalis subsp. hyointestinalis strain S12]
ATGGCAAAAACTAAAACTATATTTGAGTGTGAAGCTTGCGGAAATCAACAGAGCAAATGGATGGGCAAATGTCCTGGATG
CGGGGCTTGGGAAAGCTTTGTGGAGCTTAGTAGCGAACAGATAAAAGTCATCAATGAAATCTCAAAGATAAGTAACTCTC
CTTCATCAAAAGCAAAAGCCATAACTGATATAAAAATAGAAGAAATTTCACGCCGCACTACAGGAGACGTTGAGCTTGAT
ATCGTTCTTGGCGGAGGCTTGGTAGATGGCTCACTTGTGCTTATCGGCGGAAGTCCAGGCATCGGAAAATCAACACTGCT
TTTAAAAATTGCTTCAAATTTGGCCGAATTTGGTGAAAATGTTTTATACGTAAGCGGGGAAGAAAGTGAGTCTCAAATAA
AGCTACGTGCAAACAGACTAAATGCGAACAGCAAAAATCTATATCTTTTAACAGAGATAAACTTAGACAATATCCTAGCA
GAAATCTCGAAAAAAGAGTATAAAACGCTAGTAGTGGATTCTATACAAACATTATATAGCGATAAAATAAGCTCAGCTCC
TGGTTCAGTTTCGCAAGTACGCGAGATAACTTTTGAGCTGATGAGGCTTGCAAAAAGTAAAAATATATGCGTGTTCATCA
TCGGACATATCACAAAAGAAGGCTCTATCGCCGGACCTAGAATTTTAGAGCATATGGTTGATGTCGTGCTGTATTTTGAA
GGCGATAGCAGTATGGAGCTCAGGCTTCTTAGGGGATTTAAAAATCGCTTTGGCTCAACTAGTGAAGTTGGGATTTTTGA
AATGAGCAAATTCGGTCTGATAAGCGCAAAAGACGCTACTAGCAAATTTTTTACTAGAGGAGACGCAGTGAGTGGCTCAG
CCATAACAGTCACGATGGAAGGAAGCCGCGCGCTTATAGTAGAGATCCAAGCTCTAGTTTGCGAGAGTAGCTATCCAAAA
AGAAGTTCCACTGGATTTGATAAAAATCGTCTGGATATGATACTTGCTTTATTGGAGCGAAAGCTTGAAATTCCCTTGGG
GCATTATGACGTTTTTATAAATGTTACTGGCGGAGTAAAGATAAATGAGACCGCATGCGATCTAGCTGTTGTAGCAGCTA
TCATATCGAGCTTTAGAAATCGCCCTATCAGCAAAGAAAGCATCTTTATAGGTGAGCTTAGCTTAAACGGAGAAATCAGA
GATATATTTAACCTTGATGCAAGGCTAAAAGAAGCCAGTATGCAAAAATTTAAAAATATAATAGCACCGAGCAAACCGAT
AGAAAAATCAAATTTAAAGATATTCGTCGCAAAAGAAATTTCACAAGTGATTGAATGGATGTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(348-424)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(83-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50.348

96.421

0.485
  radA Streptococcus pneumoniae Rx1

46.756

100

0.468
  radA Streptococcus pneumoniae D39

46.756

100

0.468
  radA Streptococcus pneumoniae R6

46.756

100

0.468
  radA Streptococcus pneumoniae TIGR4

46.756

100

0.468
  radA Streptococcus mitis SK321

47.183

95.302

0.45
  radA Streptococcus mitis NCTC 12261

46.948

95.302

0.447

Multiple sequence alignment