Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   FE773_RS08600 Genome accession   NZ_CP040463
Coordinates   1605360..1606658 (+) Length   432 a.a.
NCBI ID   WP_138323824.1    Uniprot ID   -
Organism   Caminibacter mediatlanticus TB-2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1600360..1611658
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FE773_RS08570 (FE773_08570) - 1600782..1601348 (+) 567 WP_138323821.1 class I SAM-dependent methyltransferase -
  FE773_RS08575 (FE773_08575) - 1601339..1601920 (-) 582 WP_138323822.1 MBL fold metallo-hydrolase -
  FE773_RS08580 (FE773_08580) rny 1601929..1603488 (-) 1560 WP_138323823.1 ribonuclease Y -
  FE773_RS08585 (FE773_08585) - 1603415..1604026 (-) 612 WP_007473682.1 5-formyltetrahydrofolate cyclo-ligase -
  FE773_RS08590 (FE773_08590) - 1604069..1604488 (+) 420 WP_007473685.1 hypothetical protein -
  FE773_RS08595 (FE773_08595) ftsY 1604488..1605360 (+) 873 WP_007473687.1 signal recognition particle-docking protein FtsY -
  FE773_RS08600 (FE773_08600) radA 1605360..1606658 (+) 1299 WP_138323824.1 DNA repair protein RadA Machinery gene
  FE773_RS08605 (FE773_08605) - 1606705..1607004 (+) 300 WP_138323825.1 hypothetical protein -
  FE773_RS08610 (FE773_08610) - 1606997..1607809 (-) 813 WP_138323826.1 DnaJ domain-containing protein -
  FE773_RS08615 (FE773_08615) - 1607784..1608521 (-) 738 WP_138323827.1 class I SAM-dependent methyltransferase -
  FE773_RS08620 (FE773_08620) - 1608521..1609036 (-) 516 WP_138323828.1 hypothetical protein -
  FE773_RS08625 (FE773_08625) ribD 1609038..1610018 (-) 981 WP_007473696.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -
  FE773_RS08630 (FE773_08630) - 1610035..1610478 (-) 444 WP_138323829.1 ribosome maturation factor RimP -
  FE773_RS08635 (FE773_08635) - 1610475..1611278 (-) 804 WP_138323830.1 HAD-IIB family hydrolase -
  FE773_RS08640 (FE773_08640) rbfA 1611275..1611622 (-) 348 WP_007473702.1 30S ribosome-binding factor RbfA -

Sequence

Protein


Download         Length: 432 a.a.        Molecular weight: 47634.41 Da        Isoelectric Point: 7.6497

>NTDB_id=364675 FE773_RS08600 WP_138323824.1 1605360..1606658(+) (radA) [Caminibacter mediatlanticus TB-2]
MAKKKTVYECIECGYKSAKWMGKCPACGSWESFVEISEEKNKATSKPSKILRFDEIEKEEIERFSSGDNELDLVLGGGIV
PGSLVLIGGSPGVGKSTLMLKLAGNLDKKILYVAGEESPGQIKIRAERLGIKNQNLYLMPEIVVENIIEEIKKGYELVII
DSIQTIYSENLQSAPGSVSQVREATFELMRVAKETKTPIFIIGHITKEGSIAGPRVLEHMVDTVLYFEGDASRELRILRA
FKNRFGSTSEIGIFEMTKEGLVSAKNKSFFSKKALPGSAITVILEGTRPIVLEVQALVSESYSIPKRSATGFDLARLNMI
LALLEKKLNLPFNQYDVFINVTGGIKITEPAADLAIIAAIVSSFRNRPISKESVFIGEVSLVGDIRDVPGLDIRLKEAAN
LGFKKAITPSKPLENYIKTYTVSEVEKVIEWM

Nucleotide


Download         Length: 1299 bp        

>NTDB_id=364675 FE773_RS08600 WP_138323824.1 1605360..1606658(+) (radA) [Caminibacter mediatlanticus TB-2]
ATGGCAAAGAAAAAAACAGTATATGAATGTATTGAGTGTGGATATAAAAGTGCAAAATGGATGGGTAAATGCCCTGCGTG
TGGATCGTGGGAGAGTTTTGTTGAAATAAGTGAAGAAAAAAATAAAGCTACTTCTAAACCTTCCAAAATTTTAAGATTTG
ATGAAATTGAAAAAGAAGAAATTGAAAGATTTAGCAGTGGAGATAATGAACTTGATTTAGTTTTAGGAGGAGGTATAGTC
CCAGGAAGCCTTGTTTTAATTGGAGGAAGTCCAGGAGTTGGTAAATCAACTTTAATGCTAAAACTTGCTGGAAATTTAGA
TAAAAAAATTTTATATGTAGCAGGAGAAGAGTCACCTGGACAAATTAAAATAAGAGCAGAGAGACTTGGCATTAAAAATC
AAAACCTCTACTTAATGCCAGAGATAGTAGTAGAAAATATTATAGAAGAGATTAAAAAAGGATATGAGTTAGTAATAATT
GATTCCATTCAAACTATTTATTCTGAAAATCTACAATCAGCCCCAGGAAGTGTTAGTCAAGTTAGAGAAGCAACTTTTGA
ATTAATGAGAGTTGCAAAAGAAACAAAAACTCCTATTTTTATAATTGGTCATATAACAAAAGAAGGTTCAATTGCTGGAC
CAAGAGTACTTGAACATATGGTTGATACTGTTTTATATTTTGAAGGAGATGCCTCTCGTGAGCTAAGAATACTAAGAGCA
TTTAAAAATAGGTTTGGCTCAACAAGTGAAATTGGAATTTTCGAAATGACAAAAGAAGGACTTGTTAGTGCAAAAAATAA
ATCTTTTTTTAGCAAAAAAGCACTCCCTGGTAGTGCAATTACTGTAATATTAGAAGGGACTCGTCCAATAGTTTTAGAAG
TCCAAGCATTAGTTAGCGAAAGTTACTCAATCCCAAAAAGAAGTGCAACGGGGTTTGATTTAGCAAGACTAAATATGATT
TTAGCACTCTTAGAAAAAAAACTAAATCTTCCTTTTAATCAATATGATGTCTTTATAAATGTCACAGGTGGAATTAAAAT
AACCGAACCAGCCGCAGATTTAGCAATTATTGCAGCAATTGTTAGTAGTTTTAGAAATAGACCAATAAGTAAAGAGAGTG
TATTTATAGGGGAAGTTAGTTTAGTTGGAGATATTAGAGATGTCCCAGGACTTGATATAAGACTTAAAGAAGCTGCAAAC
TTAGGATTTAAAAAAGCAATTACACCATCAAAACCTCTTGAAAACTATATAAAAACATATACTGTTAGTGAAGTAGAAAA
AGTAATTGAATGGATGTAG

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(328-410)

AAA domain (AAA_25)

(60-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50.113

100

0.512
  radA Streptococcus mitis NCTC 12261

48

100

0.5
  radA Streptococcus pneumoniae D39

48.946

98.843

0.484
  radA Streptococcus pneumoniae TIGR4

48.946

98.843

0.484
  radA Streptococcus mitis SK321

48.946

98.843

0.484
  radA Streptococcus pneumoniae R6

48.946

98.843

0.484
  radA Streptococcus pneumoniae Rx1

48.946

98.843

0.484

Multiple sequence alignment