Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   E3S92_RS12980 Genome accession   NZ_CP047833
Coordinates   2637873..2638343 (-) Length   156 a.a.
NCBI ID   WP_000164421.1    Uniprot ID   P65329
Organism   Staphylococcus aureus strain UP_926     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2632873..2643343
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3S92_RS12950 (E3S92_12950) - 2632908..2633321 (+) 414 WP_001123306.1 thiol-disulfide oxidoreductase DCC family protein -
  E3S92_RS12955 (E3S92_12955) - 2633521..2633964 (+) 444 WP_000070865.1 Dps family protein -
  E3S92_RS12960 (E3S92_12960) deoD 2634085..2634795 (-) 711 WP_000160304.1 purine-nucleoside phosphorylase -
  E3S92_RS12965 (E3S92_12965) deoC 2635110..2635772 (+) 663 WP_001083321.1 deoxyribose-phosphate aldolase -
  E3S92_RS12970 (E3S92_12970) - 2636056..2637357 (+) 1302 WP_001242295.1 pyrimidine-nucleoside phosphorylase -
  E3S92_RS12975 (E3S92_12975) - 2637371..2637721 (+) 351 WP_001024033.1 membrane protein -
  E3S92_RS12980 (E3S92_12980) luxS 2637873..2638343 (-) 471 WP_000164421.1 S-ribosylhomocysteine lyase Regulator
  E3S92_RS12985 (E3S92_12985) - 2638654..2639838 (+) 1185 WP_001291503.1 M20 family metallopeptidase -
  E3S92_RS12990 (E3S92_12990) ldmS 2639838..2641031 (+) 1194 WP_000186239.1 L-aspartate--L-methionine ligase LdmS -
  E3S92_RS12995 (E3S92_12995) - 2641429..2642100 (+) 672 WP_153170583.1 DUF2750 domain-containing protein -
  E3S92_RS13000 (E3S92_13000) coaW 2642230..2643033 (-) 804 WP_000862734.1 type II pantothenate kinase -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 17513.76 Da        Isoelectric Point: 5.4567

>NTDB_id=364651 E3S92_RS12980 WP_000164421.1 2637873..2638343(-) (luxS) [Staphylococcus aureus strain UP_926]
MTKMNVESFNLDHTKVVAPFIRLAGTMEGLNGDVIHKYDIRFKQPNKEHMDMPGLHSLEHLMAENIRNHSDKVVDLSPMG
CQTGFYVSFINHDNYDDVLNIVEATLNDVLNATEVPACNEVQCGWAASHSLEGAKTIAQAFLDKRNEWHDVFGTGK

Nucleotide


Download         Length: 471 bp        

>NTDB_id=364651 E3S92_RS12980 WP_000164421.1 2637873..2638343(-) (luxS) [Staphylococcus aureus strain UP_926]
ATGACAAAAATGAATGTTGAAAGTTTCAATTTAGATCATACTAAAGTGGTTGCCCCATTTATTAGATTAGCGGGAACGAT
GGAAGGATTAAACGGAGATGTCATTCACAAATACGACATTCGTTTCAAACAACCAAACAAAGAACATATGGATATGCCTG
GATTGCATTCATTAGAACATTTAATGGCTGAAAATATTAGAAATCATAGTGACAAAGTCGTTGATTTAAGTCCTATGGGT
TGCCAAACTGGTTTCTATGTATCATTTATTAATCATGATAATTATGATGATGTACTAAATATTGTTGAAGCAACTTTAAA
TGATGTGCTAAATGCTACTGAAGTGCCTGCTTGTAATGAAGTACAATGTGGCTGGGCAGCAAGTCATTCATTAGAAGGTG
CTAAAACTATCGCTCAAGCATTTCTAGACAAACGAAACGAATGGCATGATGTTTTCGGTACAGGAAAATAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(5-148)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P65329

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

44.681

90.385

0.404