Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   LSE_RS10930 Genome accession   NC_013891
Coordinates   2222575..2224380 (-) Length   601 a.a.
NCBI ID   WP_012986252.1    Uniprot ID   -
Organism   Listeria seeligeri serovar 1/2b str. SLCC3954     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 2217575..2229380
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LSE_RS10910 (lse_2164) isdE 2218519..2219391 (-) 873 WP_012986249.1 heme ABC transporter substrate-binding protein IsdE -
  LSE_RS10915 (lse_2165) - 2219474..2221180 (-) 1707 WP_012986250.1 NEAT domain-containing protein -
  LSE_RS10920 (lse_2166) isdC 2221193..2221816 (-) 624 WP_012986251.1 heme uptake protein IsdC -
  LSE_RS10925 (lse_2167) - 2222036..2222287 (-) 252 WP_003749106.1 DUF3116 family protein -
  LSE_RS10930 (lse_2168) pepF 2222575..2224380 (-) 1806 WP_012986252.1 oligoendopeptidase F Regulator
  LSE_RS10935 (lse_2169) - 2224460..2225569 (-) 1110 WP_012986253.1 competence protein CoiA family protein -
  LSE_RS10940 (lse_2170) mecA 2225696..2226349 (-) 654 WP_003753360.1 adaptor protein MecA -
  LSE_RS10945 (lse_2171) spxA 2226582..2226977 (-) 396 WP_003720569.1 transcriptional regulator SpxA -
  LSE_RS10950 (lse_2172) - 2227300..2228262 (-) 963 WP_012986254.1 ABC transporter ATP-binding protein -
  LSE_RS10955 (lse_2173) - 2228259..2229335 (-) 1077 WP_003749116.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 601 a.a.        Molecular weight: 68733.93 Da        Isoelectric Point: 4.5801

>NTDB_id=36455 LSE_RS10930 WP_012986252.1 2222575..2224380(-) (pepF) [Listeria seeligeri serovar 1/2b str. SLCC3954]
MSKTNALPLREEVPENLTWDLTSIYANDEAWEEAFVQLQKIAEESTKFKGRLADNSQTLYEALQFRDKAYDLISNLYVYA
HLKMDQDTANAKYQGLHSRAGSLVTKLMSALSYYDPEILAMDESVLKQFLEENQDLQLYSHLLEELNLSRPYILSEKEEA
LLANAGEVLGSSSNTFNTLNNADMKFPTIKNEDGEEIEITHGRYGKLLESNLLRVRREAFLGVYSVYEGLKNTLASTLNG
QVKKSNFYASTRGYKSAREAALSNNHIPETVYDSLLKSVNENANLLHRYVKLRKELLGLEELHMYDLYTPLSDDVNLEFS
YDEAKELVLEALKPLGEEYQSILKEAFDSRWIDVMENKGKRSGAYSSGSYSTNPYILLNWQDNINNVYTLAHELGHSVHS
YYTRENQPFVYGDYSIFLAEVASTTNENLLTDYLLKKYDDPKVRAYLLNHYLDGFKGTVFRQTQFAEFEHAVHQADQNGV
ALTADYLTETYFDINKKYYGEEMVYDEEIGYEWSRIPHFYMNYYVFQYATGFSAASALSAKILTEGQPAITAYIDFLKAG
SSDYPIDVLKKAGVDMATPDPVDDALKVFAQRLDELEKLVK

Nucleotide


Download         Length: 1806 bp        

>NTDB_id=36455 LSE_RS10930 WP_012986252.1 2222575..2224380(-) (pepF) [Listeria seeligeri serovar 1/2b str. SLCC3954]
ATGAGTAAAACAAACGCATTACCACTAAGAGAAGAAGTGCCAGAAAATTTAACTTGGGACTTAACGTCAATTTATGCAAA
TGATGAAGCTTGGGAGGAAGCATTTGTACAATTGCAAAAGATAGCAGAAGAGAGTACTAAATTTAAAGGACGTTTAGCGG
ATAATAGTCAAACACTATACGAAGCATTGCAATTTCGCGATAAAGCTTATGATTTGATTAGTAACCTGTATGTATATGCT
CATTTAAAGATGGATCAAGATACAGCTAATGCAAAATATCAGGGCCTACATAGTCGAGCTGGTAGTTTAGTCACAAAATT
GATGTCAGCATTATCTTATTATGATCCAGAGATTTTAGCTATGGATGAAAGTGTGTTAAAACAATTTTTGGAAGAGAATC
AAGACTTACAGTTATACTCGCATCTTTTAGAAGAGCTAAATCTTAGCAGACCTTATATTTTAAGTGAAAAAGAAGAAGCT
CTACTTGCTAATGCGGGTGAAGTTCTTGGAAGCTCCTCGAATACGTTTAACACGTTAAATAATGCAGATATGAAATTTCC
AACAATTAAAAACGAAGATGGTGAAGAGATAGAAATCACGCATGGTCGTTATGGTAAGTTATTAGAAAGTAATCTTCTAC
GTGTTCGTAGAGAGGCTTTTCTAGGTGTATATTCCGTTTATGAAGGTTTGAAAAATACGCTTGCTTCTACACTAAATGGA
CAAGTAAAAAAATCTAATTTTTATGCTTCTACTCGTGGCTATAAGTCTGCACGTGAAGCTGCATTATCAAATAACCATAT
TCCTGAAACAGTGTATGATTCATTGCTTAAGTCTGTAAATGAAAATGCTAATTTACTTCACCGATATGTAAAATTGCGTA
AAGAATTATTAGGTTTAGAAGAGTTGCATATGTATGATCTTTATACTCCATTATCAGATGATGTTAATTTGGAATTTAGT
TATGATGAGGCGAAAGAACTTGTACTTGAAGCATTAAAACCACTTGGTGAAGAATACCAATCAATTCTGAAAGAAGCTTT
TGATAGTCGTTGGATTGATGTGATGGAAAATAAAGGCAAACGTAGTGGTGCTTATTCATCAGGTTCTTATAGCACAAATC
CTTATATTTTATTGAATTGGCAAGATAATATTAATAATGTGTATACACTTGCGCATGAACTTGGACATAGTGTGCATAGT
TACTATACAAGAGAAAATCAGCCTTTCGTCTATGGAGATTATTCGATTTTCTTGGCAGAAGTTGCATCAACAACAAATGA
GAACCTTTTGACGGATTACTTGTTAAAAAAATATGATGATCCAAAAGTTCGCGCATATTTACTCAACCACTATTTGGATG
GATTCAAAGGAACTGTTTTCCGTCAGACGCAATTTGCTGAGTTTGAGCATGCGGTTCACCAAGCTGATCAAAATGGTGTA
GCTTTGACGGCAGATTATTTAACTGAAACGTATTTTGACATTAATAAAAAATATTATGGTGAGGAAATGGTCTATGATGA
AGAGATTGGTTATGAATGGTCTCGGATTCCTCATTTCTATATGAACTATTATGTATTTCAGTATGCAACTGGGTTTTCAG
CTGCCTCTGCGCTTAGTGCAAAAATTTTAACAGAAGGGCAACCTGCTATAACTGCATATATCGACTTTTTGAAAGCGGGT
AGTTCTGATTATCCTATTGATGTACTTAAGAAAGCAGGCGTTGACATGGCGACTCCAGATCCAGTGGATGATGCTTTAAA
AGTATTCGCTCAACGGTTAGATGAATTAGAAAAACTTGTTAAATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(117-186)

Peptidase family M3 (Peptidase_M3)

(214-587)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

50.338

98.502

0.496

Multiple sequence alignment