Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   Q73A0000_RS14140 Genome accession   NZ_CP040442
Coordinates   3150174..3151520 (+) Length   448 a.a.
NCBI ID   WP_193811579.1    Uniprot ID   -
Organism   Kaistella flava (ex Peng et al. 2021) strain 7-3A     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3145174..3156520
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q73A0000_RS14125 (Q73A0000_13990) - 3146153..3147760 (-) 1608 WP_193811576.1 CTP synthase -
  Q73A0000_RS14130 (Q73A0000_13995) - 3148096..3148581 (+) 486 WP_193811577.1 T9SS type A sorting domain-containing protein -
  Q73A0000_RS14135 (Q73A0000_14000) - 3148609..3149745 (+) 1137 WP_193811578.1 FISUMP domain-containing protein -
  Q73A0000_RS14140 (Q73A0000_14005) radA 3150174..3151520 (+) 1347 WP_193811579.1 DNA repair protein RadA Machinery gene
  Q73A0000_RS14145 (Q73A0000_14010) - 3151555..3152127 (+) 573 WP_193811580.1 ACP phosphodiesterase -
  Q73A0000_RS14150 (Q73A0000_14015) - 3152124..3152630 (-) 507 WP_244140751.1 DUF6702 family protein -
  Q73A0000_RS14155 (Q73A0000_14020) - 3152682..3153254 (+) 573 WP_193811581.1 HupE/UreJ family protein -
  Q73A0000_RS14160 (Q73A0000_14025) - 3153404..3154432 (-) 1029 WP_193810754.1 IS4 family transposase -
  Q73A0000_RS14165 - 3154371..3154796 (-) 426 WP_193810755.1 hypothetical protein -

Sequence

Protein


Download         Length: 448 a.a.        Molecular weight: 49458.97 Da        Isoelectric Point: 6.4012

>NTDB_id=364519 Q73A0000_RS14140 WP_193811579.1 3150174..3151520(+) (radA) [Kaistella flava (ex Peng et al. 2021) strain 7-3A]
MAKVKTAYICQNCGTNYPQWLGQCKNCGEWNTLVEEIVTKSTTKSFSERSKQHIINIIEVETNEEQRFSTPSEELNRVLG
GGIVLGSVTLIGGEPGIGKSTLLLQLALKMKKKILYVSGEESASQIKMRADRLTELQNPNCFLFTETSVEKILHEAKKLA
PDFMIIDSIQTLQSQTIESSPGTVSQIRECSNEIIKFSKETNTPTFLVGHITKDGQIAGPKVLEHMVDVVLNFDGDRNHL
FRLLRASKNRFGSTAEIGIYEMVSQGLKEIKNPSEILITKKFEELSGNSVAVTLEGNRPMLIEIQALVSSAVYGTPQRSC
TGFDSKRLNMLLAVLEKRAGFQLGAKDVFLNITGGIKTGDPALDLAVVASILSSNEDIAISEHFCFAGEIGLSGEIRPIP
QIEQRISEAEKLGYEKIFVSNLNKIPKKKSGIVIVEVSKIEDFHECLF

Nucleotide


Download         Length: 1347 bp        

>NTDB_id=364519 Q73A0000_RS14140 WP_193811579.1 3150174..3151520(+) (radA) [Kaistella flava (ex Peng et al. 2021) strain 7-3A]
ATGGCAAAAGTGAAAACAGCATATATCTGTCAGAATTGCGGAACAAATTATCCGCAATGGTTGGGACAGTGCAAGAATTG
TGGCGAGTGGAATACTTTGGTGGAGGAGATTGTAACGAAATCGACCACGAAAAGTTTTTCCGAAAGATCGAAGCAGCATA
TTATTAATATTATCGAAGTTGAAACCAATGAAGAACAAAGATTTTCAACACCTTCTGAAGAACTCAATCGCGTTCTCGGT
GGTGGAATTGTTTTAGGTTCTGTGACTTTAATTGGTGGAGAACCGGGAATTGGGAAATCGACTTTGTTGTTGCAGCTCGC
TTTGAAAATGAAGAAGAAAATTCTTTATGTTTCAGGTGAGGAAAGTGCTTCGCAAATTAAAATGCGTGCTGACCGATTGA
CGGAACTTCAAAATCCGAACTGTTTTCTTTTTACTGAAACTTCCGTGGAAAAGATTTTACACGAAGCTAAAAAGCTGGCG
CCGGATTTTATGATTATTGATTCGATTCAAACGCTTCAAAGTCAAACCATCGAAAGTTCACCCGGAACAGTTTCTCAGAT
TAGAGAATGTTCAAATGAAATTATTAAATTTTCAAAAGAAACGAATACGCCGACTTTCCTGGTTGGTCACATTACAAAAG
ACGGACAAATCGCTGGTCCGAAAGTTTTGGAACACATGGTCGATGTCGTTTTGAATTTTGATGGCGACCGAAATCATTTG
TTCAGATTGTTACGAGCGAGTAAAAACCGTTTTGGTTCCACCGCAGAAATCGGAATTTACGAAATGGTTTCGCAAGGTTT
GAAAGAGATAAAAAATCCTTCAGAAATATTAATCACCAAGAAATTCGAGGAACTTTCTGGGAATTCTGTCGCTGTAACTT
TGGAGGGAAACCGGCCGATGTTGATTGAAATTCAGGCTTTGGTAAGTTCCGCAGTTTATGGAACTCCGCAAAGAAGTTGC
ACCGGTTTTGATTCAAAAAGATTAAATATGCTTTTGGCAGTTTTAGAAAAAAGAGCTGGTTTTCAATTAGGCGCAAAAGA
TGTTTTCCTGAATATTACAGGCGGAATAAAAACGGGAGATCCGGCTTTGGATTTAGCGGTTGTGGCGTCAATTCTTTCTT
CCAATGAAGATATTGCGATTTCTGAACATTTCTGTTTTGCTGGAGAAATAGGATTGAGCGGAGAAATTCGGCCGATTCCT
CAGATTGAACAAAGAATTTCTGAAGCGGAGAAATTAGGTTACGAAAAGATATTTGTGTCGAACTTAAATAAAATTCCTAA
GAAAAAAAGCGGAATTGTAATTGTGGAAGTGAGTAAGATTGAGGATTTTCATGAGTGCTTGTTTTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(64-216)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(337-422)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae D39

47.807

100

0.487
  radA Streptococcus mitis NCTC 12261

47.807

100

0.487
  radA Streptococcus pneumoniae Rx1

47.807

100

0.487
  radA Streptococcus pneumoniae R6

47.807

100

0.487
  radA Streptococcus pneumoniae TIGR4

47.807

100

0.487
  radA Bacillus subtilis subsp. subtilis str. 168

48.009

100

0.484
  radA Streptococcus mitis SK321

49.647

94.866

0.471

Multiple sequence alignment