Detailed information NTG0036450

Bioinformatically predicted

Overview

• Name: recD2
• Type: Machinery gene
• Locus tag: LSE_RS07080
• Genome accession: NC_013891
• Coordinates: 1452566..1454959 (-)
• Length: 797 a.a.
• NCBI ID: WP_012985677.1
• Uniprot ID: -
• Organism: Listeria seeligeri serovar 1/2b str. SLCC3954
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1447566..1459959

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LSE_RS07060 (lse_1420)	-	1448039..1448734 (-)	696	WP_012985673.1	ABC transporter ATP-binding protein	-
LSE_RS07065 (lse_1421)	-	1448743..1450239 (-)	1497	WP_012985674.1	ABC transporter permease	-
LSE_RS07070 (lse_1422)	pieR	1450406..1451092 (+)	687	WP_012985675.1	two component system response regulator PieR	-
LSE_RS07075 (lse_1423)	pieS	1451089..1452528 (+)	1440	WP_012985676.1	two component system sensor histidine kinase PieS	-
LSE_RS07080 (lse_1424)	recD2	1452566..1454959 (-)	2394	WP_012985677.1	ATP-dependent RecD-like DNA helicase	Machinery gene
LSE_RS07085 (lse_1425)	-	1454985..1455623 (-)	639	WP_139591419.1	tetratricopeptide repeat protein	-
LSE_RS07090 (lse_1426)	-	1455666..1456406 (-)	741	WP_012985678.1	alpha/beta hydrolase	-
LSE_RS07095 (lse_1427)	mnmA	1456525..1457640 (-)	1116	WP_003747801.1	tRNA 2-thiouridine(34) synthase MnmA	-
LSE_RS07100 (lse_1428)	-	1457659..1458807 (-)	1149	WP_012985679.1	cysteine desulfurase family protein	-

Sequence

Protein

• Length: 797 a.a.
• Molecular weight: 89960.11 Da
• Isoelectric Point: 4.8404

>NTDB_id=36450 LSE_RS07080 WP_012985677.1 1452566..1454959(-) (recD2) [Listeria seeligeri serovar 1/2b str. SLCC3954]
MAEQESLALFDTPEELFMKGTMLSTIFYNAENLFSVVRILVKETNADWDEKDIIVTGFFPALHEQEVYTFYGKMQEHAKF
GQQFKAERFRKEMPQSRAGLINYLSGELFKGIGKVTAENIVDTIGDDAITRILSDPSLLNTVPKLPSGAAESLLASLQEN
QGLEHVMVGLNEYGFGPQLSMKIFQAYKQNAIEVLENNPYKLIEDVKGIGFQRADELGRKLGLGGNHPERLRAGILFMLD
SVCMQQGHVYMEQEALLAEVTYLLEESEGVRIDQAILMEQVEKLAEEQKIITENTRVYMPSLYYSESGFAYHVKRMLKQT
EYQEQFPQSEFLLALGELEERIGVHYGDSQREALAQALMSPMLVLTGGPGTGKTTVIKGIVELYAELNGVSLDPHAYKDG
ATFPVLLAAPTGRAAKRMSESTGLPAMTIHRLLGMNGQEQMDDDAERLIDGRLLIVDEMSMVDIWLANQLFRALPAHMQV
VLVGDQDQLPSVGPGQVLKDILHSKQIPTVALSDIYRQKDGSSIIEMAHNIKEGMLPADFTKNSADRSFFHCTVNQIGDV
VEQVVKNAKNKGFRAKDIQVLAPMYRGPAGIDILNKKLQEIFNPNDTGRRKEVQFGELKYRVHDKVLQLINQPEKNVFNG
DIGEIISIIYAKENTEKQDMIVVQFDQTEVSYYRQEFNQLTHAYCCSIHKAQGSEFPIVIMPIVRSYYRMLRRDLLYTGV
TRSKQFLILCGEEEAFRMGVERVDENKRNTTLSERLTSEDVMLEQMTNKRILTVENIMEIDPMIGMEGITPDQFMAG

Nucleotide

• Length: 2394 bp

>NTDB_id=36450 LSE_RS07080 WP_012985677.1 1452566..1454959(-) (recD2) [Listeria seeligeri serovar 1/2b str. SLCC3954]
ATGGCTGAACAAGAATCACTTGCCTTATTTGATACACCAGAAGAATTATTTATGAAGGGCACGATGCTGTCCACCATTTT
TTATAATGCCGAAAACCTCTTTTCTGTTGTGCGAATTCTTGTAAAAGAAACGAATGCAGACTGGGATGAAAAAGATATTA
TTGTGACTGGTTTTTTTCCGGCACTTCATGAACAAGAAGTTTATACTTTTTATGGAAAAATGCAAGAACATGCCAAATTT
GGTCAACAATTCAAAGCAGAGCGTTTTAGGAAAGAAATGCCACAATCACGTGCGGGCTTAATTAATTATTTATCAGGAGA
ACTTTTTAAAGGTATTGGTAAAGTAACGGCAGAAAATATTGTCGATACAATTGGCGATGATGCGATTACTCGAATCTTAT
CTGATCCGAGCTTATTAAATACGGTTCCAAAACTGCCATCTGGTGCTGCAGAGAGTTTGCTTGCTTCACTTCAAGAAAAT
CAAGGTTTAGAACATGTCATGGTGGGACTTAATGAATATGGATTCGGTCCGCAACTTTCTATGAAAATTTTTCAAGCTTA
TAAGCAAAATGCGATTGAAGTGTTAGAAAATAATCCTTATAAATTAATTGAAGACGTCAAAGGAATTGGTTTTCAACGTG
CGGATGAACTTGGTCGGAAACTTGGCCTCGGAGGAAACCATCCAGAGCGGCTTCGTGCCGGGATTTTATTTATGCTAGAT
TCAGTTTGTATGCAGCAAGGGCATGTTTATATGGAACAAGAAGCCTTACTTGCAGAAGTGACTTATTTACTGGAAGAGAG
TGAAGGGGTTCGGATTGATCAAGCGATTTTAATGGAACAAGTCGAGAAACTCGCTGAAGAGCAAAAAATTATCACTGAAA
ATACACGTGTTTATATGCCCTCGCTTTATTATTCAGAAAGTGGGTTTGCTTATCATGTAAAAAGAATGCTTAAACAAACG
GAATACCAAGAACAATTTCCTCAGTCGGAATTTTTGCTCGCGCTCGGTGAATTAGAAGAGCGAATTGGTGTTCATTACGG
CGATTCCCAGCGTGAAGCCTTAGCACAAGCATTAATGTCACCGATGCTTGTGCTAACTGGTGGTCCTGGAACAGGGAAAA
CGACTGTTATTAAAGGAATTGTGGAATTATATGCAGAATTAAATGGTGTAAGTCTCGACCCACATGCCTATAAAGATGGA
GCGACTTTCCCAGTGTTATTAGCAGCTCCAACTGGAAGAGCGGCTAAACGGATGTCAGAATCTACAGGGCTTCCAGCAAT
GACTATTCACCGTTTGCTTGGTATGAATGGGCAGGAACAAATGGATGATGATGCGGAAAGATTAATTGATGGGCGACTTT
TAATTGTGGACGAAATGTCGATGGTTGATATTTGGCTTGCTAATCAGCTGTTTCGTGCATTACCAGCTCATATGCAAGTG
GTGTTAGTTGGCGACCAAGATCAGTTACCATCAGTCGGACCAGGGCAAGTTTTAAAAGATATCCTTCATTCGAAACAAAT
CCCAACCGTTGCACTTTCTGATATTTATCGGCAAAAAGATGGTTCTTCTATCATTGAAATGGCTCATAATATCAAAGAGG
GAATGCTCCCAGCCGATTTCACAAAAAACAGTGCTGATCGGTCGTTCTTTCATTGTACTGTGAACCAAATTGGCGATGTC
GTGGAGCAAGTTGTAAAAAATGCTAAAAATAAAGGATTTCGAGCAAAAGACATCCAAGTGTTAGCACCAATGTATCGCGG
ACCAGCAGGAATTGATATTTTAAATAAAAAATTGCAAGAAATTTTCAATCCTAATGATACTGGCCGACGAAAAGAAGTGC
AATTTGGAGAATTAAAATATCGTGTCCATGACAAAGTGTTGCAATTAATTAATCAACCTGAAAAAAATGTCTTTAATGGT
GATATAGGCGAAATTATCTCGATTATTTATGCCAAAGAAAATACGGAAAAACAAGATATGATTGTGGTGCAATTTGATCA
AACAGAAGTTTCTTATTACCGGCAAGAATTCAATCAACTGACTCATGCATACTGTTGTTCCATTCATAAAGCTCAGGGAA
GTGAGTTTCCTATTGTAATTATGCCGATTGTACGTAGTTATTACCGAATGCTTAGACGTGACCTGCTTTATACGGGAGTC
ACTCGAAGTAAACAATTTTTGATTCTTTGCGGAGAAGAAGAGGCGTTTCGGATGGGAGTGGAGCGGGTCGATGAAAATAA
ACGTAACACGACACTTTCAGAACGTTTAACTAGCGAAGATGTAATGCTAGAACAAATGACGAACAAACGAATATTAACGG
TTGAAAACATTATGGAGATTGACCCAATGATTGGAATGGAAGGAATAACACCAGATCAGTTTATGGCAGGTTAA

Domains

Predicted by InterproScan.

• Helix-hairpin-helix containing domain (HHH_RecD2) (159-250)

• UvrD-like helicase C-terminal domain (UvrD_C_2) (682-730)

• AAA domain (AAA_30) (346-553)

• ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13) (594-665)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recD2	Bacillus subtilis subsp. subtilis str. 168	57.868	98.871	0.572