Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   FED51_RS14080 Genome accession   NZ_CP040441
Coordinates   2911888..2913585 (-) Length   565 a.a.
NCBI ID   WP_053430718.1    Uniprot ID   A0A0M0KI00
Organism   Halalkalibacterium halodurans isolate LB-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2906888..2918585
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FED51_RS14055 - 2907230..2907688 (-) 459 WP_010898918.1 hypothetical protein -
  FED51_RS14060 steA 2907685..2908824 (-) 1140 WP_053430721.1 putative cytokinetic ring protein SteA -
  FED51_RS14065 - 2909035..2909232 (-) 198 WP_053430720.1 hypothetical protein -
  FED51_RS14070 spo0A 2909376..2910179 (-) 804 WP_010898921.1 sporulation transcription factor Spo0A -
  FED51_RS14075 spoIVB 2910447..2911760 (-) 1314 WP_134229573.1 SpoIVB peptidase -
  FED51_RS14080 recN 2911888..2913585 (-) 1698 WP_053430718.1 DNA repair protein RecN Machinery gene
  FED51_RS14085 ahrC 2913616..2914065 (-) 450 WP_010898925.1 transcriptional regulator AhrC/ArgR -
  FED51_RS14090 - 2914265..2915083 (-) 819 WP_010898926.1 TlyA family RNA methyltransferase -
  FED51_RS14095 dxs 2915091..2916980 (-) 1890 WP_010898927.1 1-deoxy-D-xylulose-5-phosphate synthase -
  FED51_RS14100 - 2916990..2917592 (-) 603 WP_010898928.1 hypothetical protein -
  FED51_RS21160 - 2917794..2917955 (-) 162 WP_153231708.1 hypothetical protein -
  FED51_RS21580 - 2918102..2918236 (+) 135 WP_276324543.1 hypothetical protein -

Sequence

Protein


Download         Length: 565 a.a.        Molecular weight: 63794.79 Da        Isoelectric Point: 5.1588

>NTDB_id=364488 FED51_RS14080 WP_053430718.1 2911888..2913585(-) (recN) [Halalkalibacterium halodurans isolate LB-1]
MLVELSIKQFAIIEQLTVSFDKGLTVLTGETGAGKSIIIDAIGLLLGGRGSAEYVRYGEKRAEIEGLFILEPKHPAFAKA
EALGIQADDGMIVLRRDVTNQGKSICRINGKLVTLGILREIGQSLVDIHGQHEHQTLLHKEQHLSLLDHFAGHPLETVLD
EYKELYKQYLALERQLAQLTENEKEMAQKTDLFQYQLKEIEAAKLEPGEDKRLEAERLKLANAEKLFKSVHDAYNNLYGE
GRGLEWINNALTHIEDASSYDPELGKLQQHVQEQYYLLEEAMFTLRDYLDKLEFDPTRLEMIESRLHELQKLKRKYGDSV
DAIVEYASTIEEQLDSILHKDDRIKQLEQSLETMRLDLEVESAALTNIRKQKAMELTESIHEQLRALYMEKTSFEVKFHE
TAEGKKPFRENGVDDVEFYLSTNPGEPVKPLAKVASGGEISRIMLALKTIFSNHQGVTSVIFDEVDTGVSGRVAQAIAEK
IRHISVGSQVLCISHLPQVAAMADTHLYISKKEVGGRVTTEVRALKDEEKVEEIARMIAGVEMTELTKEHAKELLDLATS
IKCNH

Nucleotide


Download         Length: 1698 bp        

>NTDB_id=364488 FED51_RS14080 WP_053430718.1 2911888..2913585(-) (recN) [Halalkalibacterium halodurans isolate LB-1]
ATGCTCGTTGAGTTATCCATCAAACAATTTGCGATCATTGAACAATTAACAGTCTCTTTTGATAAAGGTTTAACCGTATT
GACAGGGGAAACGGGTGCTGGAAAATCAATTATCATTGATGCGATTGGTCTGCTGCTAGGAGGCCGAGGATCAGCGGAGT
ATGTCCGCTATGGCGAAAAACGAGCAGAGATTGAAGGCCTTTTTATATTGGAGCCGAAGCATCCTGCTTTTGCGAAAGCG
GAGGCCCTCGGAATACAAGCGGATGATGGGATGATCGTTTTAAGAAGAGATGTGACAAATCAAGGAAAGAGCATTTGCCG
GATTAATGGAAAGTTGGTCACGCTCGGAATCTTGAGAGAAATTGGTCAAAGCCTTGTGGATATCCATGGACAACATGAGC
ATCAAACATTGCTTCATAAAGAGCAGCATCTCTCACTACTCGATCATTTTGCGGGCCATCCATTAGAGACTGTGTTGGAT
GAGTATAAGGAATTGTACAAGCAATACTTAGCGCTGGAAAGACAACTCGCTCAATTGACGGAAAATGAAAAAGAGATGGC
GCAAAAAACAGATTTATTTCAATACCAGTTAAAAGAAATTGAAGCCGCAAAACTTGAACCAGGTGAAGATAAACGACTTG
AAGCTGAACGATTAAAGCTGGCAAATGCAGAGAAGCTGTTTAAGTCTGTACATGATGCATACAATAATTTATATGGAGAA
GGGCGAGGACTTGAATGGATCAACAATGCCCTCACTCATATTGAAGACGCTTCGAGCTACGACCCAGAATTAGGTAAGCT
TCAACAACACGTACAGGAGCAGTATTATTTACTTGAAGAGGCGATGTTCACACTCCGTGACTATTTGGACAAGCTTGAGT
TTGATCCTACACGACTTGAAATGATTGAAAGCAGACTTCATGAACTGCAGAAGCTGAAACGTAAATATGGTGATTCAGTC
GACGCAATCGTGGAATACGCATCAACCATTGAGGAACAGCTTGATTCGATTTTACATAAAGATGACCGCATCAAACAATT
AGAGCAGTCATTGGAAACGATGCGACTCGATTTAGAAGTGGAAAGTGCTGCCTTAACAAACATTCGTAAGCAGAAAGCAA
TGGAGCTAACCGAGTCAATTCATGAGCAGTTGCGCGCTCTCTACATGGAGAAAACGTCCTTCGAAGTAAAATTTCATGAA
ACAGCAGAAGGGAAGAAGCCCTTTCGTGAAAATGGCGTAGATGATGTAGAATTTTATTTATCCACCAATCCAGGGGAACC
AGTCAAGCCGTTAGCCAAAGTCGCTTCAGGTGGCGAGATTTCACGGATTATGCTCGCATTAAAGACAATCTTCTCCAATC
ATCAAGGCGTCACGTCCGTTATTTTCGATGAAGTGGATACAGGAGTAAGCGGACGTGTGGCGCAAGCAATAGCGGAAAAA
ATTCGCCACATTTCCGTCGGCTCGCAAGTTTTATGCATTTCTCATTTACCGCAAGTGGCTGCCATGGCAGATACGCACCT
CTACATTTCAAAAAAGGAAGTAGGGGGTAGGGTGACGACCGAAGTGCGAGCACTTAAGGATGAAGAAAAGGTGGAAGAGA
TCGCGCGAATGATCGCTGGCGTTGAAATGACAGAGCTGACAAAGGAGCACGCAAAGGAGCTTCTGGACCTAGCGACAAGC
ATCAAATGTAACCATTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-512)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0M0KI00

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

56.348

100

0.573

Multiple sequence alignment