Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   FED51_RS05825 Genome accession   NZ_CP040441
Coordinates   1194402..1195355 (+) Length   317 a.a.
NCBI ID   WP_138090332.1    Uniprot ID   -
Organism   Halalkalibacterium halodurans isolate LB-1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1189402..1200355
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FED51_RS05805 - 1190294..1190821 (+) 528 WP_053431781.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  FED51_RS05810 - 1191016..1192233 (+) 1218 WP_138090122.1 ISL3-like element IS651 family transposase -
  FED51_RS05815 - 1192532..1193428 (+) 897 WP_053431780.1 amidase domain-containing protein -
  FED51_RS05820 trmL 1193494..1193967 (+) 474 WP_053431779.1 tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL -
  FED51_RS05825 ceuB 1194402..1195355 (+) 954 WP_138090332.1 ABC transporter permease Machinery gene
  FED51_RS05830 - 1195345..1196292 (+) 948 WP_010897196.1 iron chelate uptake ABC transporter family permease subunit -
  FED51_RS05835 - 1196286..1197044 (+) 759 WP_053431777.1 ABC transporter ATP-binding protein -
  FED51_RS05840 - 1197076..1198065 (+) 990 WP_083445592.1 siderophore ABC transporter substrate-binding protein -
  FED51_RS05845 - 1198224..1200119 (+) 1896 WP_010897199.1 PrkA family serine protein kinase -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35129.59 Da        Isoelectric Point: 9.9803

>NTDB_id=364472 FED51_RS05825 WP_138090332.1 1194402..1195355(+) (ceuB) [Halalkalibacterium halodurans isolate LB-1]
MKKRYLLPVLLLSSICSLFIGVSEVTLSGLLRMDEGQWQILFTSRLPRLMSILIAGIGMSVCGLIMQQLTRNRFVSPTTA
GTLDSGRLGILVSMILFTSAGPIEKIFVAFLFALAGTFIFMMLLERIKFKDPIFIPLVGLMFGSIISSITTFFAYRYDLI
QNMSAWLQGNFALMIKGQYELLYISIPVLILAYVFANRFTVAGMGEEFAVNLGLKYKQVVNLGLVIVALVTSVVVLTVGM
IPFLGLIIPNIVSIYKGDNLRKNLPYTALLGALFVLLCDIIGRVIIYPYEIAIGLTVGVVGSAIFLYMLLRRHKYGF

Nucleotide


Download         Length: 954 bp        

>NTDB_id=364472 FED51_RS05825 WP_138090332.1 1194402..1195355(+) (ceuB) [Halalkalibacterium halodurans isolate LB-1]
ATGAAGAAACGTTATCTCTTGCCTGTATTACTTCTTTCCTCCATCTGTTCGTTGTTTATCGGTGTGAGTGAAGTCACGCT
TTCAGGCCTGCTACGAATGGATGAGGGGCAATGGCAAATTCTTTTCACAAGCAGACTACCACGGTTGATGAGCATTTTAA
TTGCCGGCATCGGCATGAGCGTTTGCGGTTTGATCATGCAGCAGCTTACACGTAATCGGTTTGTTTCACCAACAACAGCG
GGAACGCTTGATTCTGGTCGCCTAGGCATCTTAGTTTCGATGATCCTGTTTACTTCAGCAGGACCGATCGAGAAAATTTT
TGTCGCTTTTTTATTTGCCTTAGCTGGGACGTTCATTTTTATGATGTTACTTGAGCGAATTAAGTTTAAGGATCCGATTT
TTATTCCCCTCGTGGGACTCATGTTTGGAAGCATCATTAGCTCAATCACGACTTTCTTTGCATATCGCTATGATCTAATA
CAGAACATGTCAGCATGGCTGCAAGGAAATTTCGCCTTAATGATCAAGGGACAATATGAACTGTTATACATAAGTATCCC
CGTACTCATTCTAGCTTATGTGTTTGCCAATCGTTTCACTGTGGCAGGAATGGGAGAAGAGTTCGCTGTCAACTTAGGCT
TAAAATATAAGCAAGTAGTGAATCTCGGTCTGGTCATTGTAGCTTTAGTTACATCTGTCGTCGTGTTGACTGTAGGAATG
ATTCCCTTTCTCGGGTTAATCATTCCAAATATTGTATCGATCTACAAAGGGGATAATTTGCGAAAAAATCTTCCATATAC
CGCCCTGTTAGGCGCATTGTTTGTTCTTTTGTGCGATATTATCGGTCGGGTCATTATTTATCCTTATGAAATAGCGATTG
GGCTGACGGTTGGTGTGGTCGGAAGTGCGATTTTCCTATACATGCTGTTAAGGAGACATAAATATGGGTTTTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

53.674

98.738

0.53

Multiple sequence alignment