Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   FED51_RS00690 Genome accession   NZ_CP040441
Coordinates   143125..144498 (+) Length   457 a.a.
NCBI ID   WP_053432300.1    Uniprot ID   A0A0M0KDY0
Organism   Halalkalibacterium halodurans isolate LB-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 138125..149498
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FED51_RS00670 - 138395..138865 (+) 471 WP_053432297.1 CtsR family transcriptional regulator -
  FED51_RS00675 - 138891..139424 (+) 534 WP_053432298.1 UvrB/UvrC motif-containing protein -
  FED51_RS00680 - 139427..140497 (+) 1071 WP_053432299.1 protein arginine kinase -
  FED51_RS00685 clpC 140516..142957 (+) 2442 WP_010896286.1 ATP-dependent protease ATP-binding subunit ClpC -
  FED51_RS00690 radA 143125..144498 (+) 1374 WP_053432300.1 DNA repair protein RadA Machinery gene
  FED51_RS00695 disA 144507..145580 (+) 1074 WP_053432301.1 DNA integrity scanning diadenylate cyclase DisA -
  FED51_RS00700 - 145739..146827 (+) 1089 WP_010896289.1 PIN/TRAM domain-containing protein -
  FED51_RS00705 ispD 147067..147753 (+) 687 WP_010896290.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  FED51_RS00710 ispF 147754..148227 (+) 474 WP_053432302.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 49751.22 Da        Isoelectric Point: 6.9049

>NTDB_id=364469 FED51_RS00690 WP_053432300.1 143125..144498(+) (radA) [Halalkalibacterium halodurans isolate LB-1]
MAKKKTKFMCQECGYESAKWMGKCPGCQSWNSMVEEFTEVKAKSSRSYVTSGAGIAKPQPITKVEREQEPRIDTSMKELN
RVLGGGIVPGSLVLVGGDPGIGKSTLLLQLSARLADLKQRVLYISGEESVKQTKIRSDRLGVLSDHLYVLAETDMEKIEQ
AIGEVNPTLVIIDSIQTVYQDEITSAPGSVAQVRECTASFMRMAKTTGIAIFIVGHVTKQGAIAGPKLLEHMVDSVLYFE
GERHHTYRILRAVKNRFGSTNEMGIFEMKESGLEEVANPSEIFLEDRSSGVAGSTVVASMEGTRPVLVELQALISPTSFG
NPRRMATGVDHNRIALLMAVLEKRVGMLLQNQDAYVNVAGGVRLDEPAIDLGIAVSIASSFRNQHTNPHEVVIGEIGLTG
EVRRVSRIDQRVNEAAKLGFTRVIIPDKNLGGWTIPSTIEVIGVSTVQDALEVTLGR

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=364469 FED51_RS00690 WP_053432300.1 143125..144498(+) (radA) [Halalkalibacterium halodurans isolate LB-1]
GTGGCGAAAAAGAAAACAAAGTTTATGTGTCAAGAGTGTGGGTATGAGTCAGCCAAATGGATGGGGAAATGTCCTGGCTG
TCAAAGCTGGAACTCCATGGTCGAGGAATTTACAGAAGTTAAGGCAAAATCCTCTCGGAGTTATGTGACATCTGGAGCGG
GTATTGCTAAGCCACAGCCGATTACGAAAGTTGAACGGGAGCAGGAGCCGCGAATCGATACATCGATGAAGGAGCTTAAC
CGAGTACTTGGTGGAGGGATCGTTCCAGGCTCACTCGTTCTTGTCGGAGGGGATCCTGGGATCGGTAAGTCAACGTTATT
GTTACAACTATCCGCCCGTCTTGCTGATTTGAAGCAACGAGTGCTCTATATTTCAGGAGAGGAATCGGTCAAGCAAACAA
AAATCCGTTCCGACCGACTAGGAGTCTTGTCTGACCACTTGTATGTATTAGCAGAAACAGATATGGAAAAGATTGAACAA
GCGATTGGAGAGGTTAATCCCACTCTTGTTATCATTGATTCCATTCAGACGGTCTACCAAGACGAGATTACATCTGCTCC
AGGAAGTGTCGCCCAAGTACGAGAGTGTACCGCTTCCTTTATGAGAATGGCGAAAACAACGGGGATCGCGATTTTTATCG
TCGGTCACGTGACAAAGCAAGGGGCGATTGCTGGGCCGAAATTACTTGAGCACATGGTAGACTCTGTTCTTTACTTTGAA
GGGGAGCGGCACCATACGTATCGAATTTTACGAGCGGTCAAGAATCGATTTGGCTCTACTAATGAGATGGGGATTTTTGA
AATGAAAGAGTCAGGGCTAGAGGAAGTGGCCAACCCTTCGGAAATCTTTTTAGAAGATCGCTCCAGTGGTGTGGCAGGTT
CAACGGTCGTTGCCTCGATGGAAGGCACGAGGCCCGTTTTAGTAGAGCTGCAAGCGCTCATTTCACCGACCAGCTTCGGA
AATCCAAGGCGCATGGCGACAGGGGTGGATCACAATCGAATTGCGTTGTTAATGGCAGTGCTTGAAAAGCGGGTCGGCAT
GCTATTACAAAATCAAGATGCCTACGTGAACGTGGCTGGTGGTGTGCGATTGGATGAGCCAGCGATTGATCTGGGAATTG
CTGTGAGCATTGCGTCCAGTTTTCGAAATCAACATACAAATCCCCACGAAGTTGTTATCGGTGAAATCGGGTTAACGGGG
GAGGTTCGTAGGGTATCGCGAATCGATCAACGAGTGAATGAGGCCGCGAAGTTGGGGTTTACGCGGGTCATCATTCCAGA
TAAGAATCTTGGAGGGTGGACCATTCCTTCTACGATTGAAGTAATAGGTGTATCGACTGTTCAAGATGCGTTAGAGGTTA
CGTTAGGGAGGTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(67-221)

Subunit ChlI of Mg-chelatase (ChlI)

(345-429)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0M0KDY0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

71.834

100

0.72
  radA Streptococcus pneumoniae Rx1

59.513

98.906

0.589
  radA Streptococcus pneumoniae D39

59.513

98.906

0.589
  radA Streptococcus pneumoniae R6

59.513

98.906

0.589
  radA Streptococcus pneumoniae TIGR4

59.513

98.906

0.589
  radA Streptococcus mitis NCTC 12261

59.513

98.906

0.589
  radA Streptococcus mitis SK321

59.513

98.906

0.589

Multiple sequence alignment