Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   CJM1_RS03035 Genome accession   NC_017280
Coordinates   587879..588262 (+) Length   127 a.a.
NCBI ID   WP_002852281.1    Uniprot ID   Q9PHN2
Organism   Campylobacter jejuni subsp. jejuni M1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 582879..593262
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CJM1_RS03015 (CJM1_0606) - 582958..584892 (-) 1935 WP_014516962.1 ribonuclease R family protein -
  CJM1_RS03020 (CJM1_0607) ilvC 585011..586033 (+) 1023 WP_002866493.1 ketol-acid reductoisomerase -
  CJM1_RS03025 (CJM1_0608) - 586037..587119 (+) 1083 WP_002876692.1 divergent polysaccharide deacetylase family protein -
  CJM1_RS03030 (CJM1_0609) dprA 587109..587882 (+) 774 WP_002866495.1 DNA-processing protein DprA Machinery gene
  CJM1_RS03035 (CJM1_0610) dprB 587879..588262 (+) 384 WP_002852281.1 Holliday junction resolvase RuvX Machinery gene
  CJM1_RS03040 (CJM1_0611) - 588291..589130 (+) 840 WP_002866496.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  CJM1_RS03045 (CJM1_0612) msrA 589306..589803 (-) 498 WP_002866497.1 peptide-methionine (S)-S-oxide reductase MsrA -
  CJM1_RS03050 (CJM1_0613) ppa 589844..590362 (-) 519 WP_002855031.1 inorganic diphosphatase -
  CJM1_RS03055 (CJM1_0614) adk 590372..590950 (-) 579 WP_002855137.1 adenylate kinase -
  CJM1_RS03060 (CJM1_0615) aspS 590947..592698 (-) 1752 WP_012006668.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14088.59 Da        Isoelectric Point: 9.5433

>NTDB_id=36440 CJM1_RS03035 WP_002852281.1 587879..588262(+) (dprB) [Campylobacter jejuni subsp. jejuni M1]
MRALALDVGLKRIGVALCIDKKIALPLDAVLRKNRNQAANEIKNLLKIHEISLLIVGIPKGGSSEEEMTRRIKHFVSLLE
FDKEICFVDESGTSKEALGYGVANTRKKDGKLDSLSAFIMIKDYFAL

Nucleotide


Download         Length: 384 bp        

>NTDB_id=36440 CJM1_RS03035 WP_002852281.1 587879..588262(+) (dprB) [Campylobacter jejuni subsp. jejuni M1]
ATGAGAGCTTTGGCTTTAGATGTAGGTTTAAAACGCATAGGTGTAGCGCTTTGTATAGATAAAAAGATCGCTTTGCCTTT
AGATGCAGTTTTAAGAAAAAATCGCAATCAAGCCGCTAATGAAATTAAAAATTTACTTAAAATACATGAGATTTCTTTAC
TCATTGTTGGCATTCCTAAGGGTGGATCAAGTGAAGAAGAAATGACAAGACGCATTAAGCATTTTGTTTCTTTGCTTGAA
TTTGATAAAGAAATTTGCTTTGTAGATGAAAGCGGAACAAGCAAAGAAGCTTTAGGATACGGCGTAGCCAATACACGCAA
AAAAGATGGTAAATTAGACTCTTTATCCGCTTTTATCATGATAAAGGATTATTTTGCTCTCTAG

Domains

Predicted by InterProScan.

Holliday junction resolvase (RuvX)

(1-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9PHN2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

44.882

100

0.449

Multiple sequence alignment