Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   FE321_RS07150 Genome accession   NZ_CP040424
Coordinates   1505899..1507713 (-) Length   604 a.a.
NCBI ID   WP_112768273.1    Uniprot ID   -
Organism   Dolosigranulum pigrum strain KPL3033     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1500899..1512713
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FE321_RS07115 (FE321_07095) - 1501094..1501558 (+) 465 WP_111973574.1 GNAT family N-acetyltransferase -
  FE321_RS07120 (FE321_07100) - 1501551..1502003 (+) 453 WP_208954987.1 GNAT family N-acetyltransferase -
  FE321_RS07125 (FE321_07105) - 1502045..1502944 (-) 900 WP_208954988.1 RluA family pseudouridine synthase -
  FE321_RS07130 (FE321_07110) - 1502934..1503746 (-) 813 WP_208954989.1 NAD kinase -
  FE321_RS07135 (FE321_07115) - 1503748..1504377 (-) 630 WP_004636717.1 GTP pyrophosphokinase family protein -
  FE321_RS07140 (FE321_07120) - 1504470..1505057 (+) 588 WP_208954990.1 CYTH domain-containing protein -
  FE321_RS07145 (FE321_07125) - 1505151..1505777 (+) 627 WP_111973578.1 DsbA family protein -
  FE321_RS07150 (FE321_07130) pepF 1505899..1507713 (-) 1815 WP_112768273.1 oligoendopeptidase F Regulator
  FE321_RS07155 (FE321_07135) - 1507859..1508971 (-) 1113 WP_111950050.1 competence protein CoiA family protein -
  FE321_RS07160 (FE321_07140) - 1509074..1509718 (-) 645 WP_077862708.1 adaptor protein MecA -
  FE321_RS07165 (FE321_07145) - 1509821..1510213 (-) 393 WP_004636723.1 ArsC/Spx/MgsR family protein -
  FE321_RS07170 (FE321_07150) - 1510238..1511257 (-) 1020 WP_004636724.1 lipoate--protein ligase -
  FE321_RS07175 - 1511360..1511533 (-) 174 WP_208954991.1 hypothetical protein -

Sequence

Protein


Download         Length: 604 a.a.        Molecular weight: 69429.25 Da        Isoelectric Point: 4.5104

>NTDB_id=364263 FE321_RS07150 WP_112768273.1 1505899..1507713(-) (pepF) [Dolosigranulum pigrum strain KPL3033]
MSDTKQLPKRHEVEEAKTWDLTTIYESDEAWEQDFEAIDDLKDKFVNFQGTLGDGADNFLAAFETLLDLNRKLSKLFVYS
HLKSDQDTENSTYQTLNDRARLKYAEVAEARSWFTPELLSLSQETIDQYFVEAEGLQPYKHEIETILADRDHVLSAEKEA
LLAGASDILSSGSQTFSMLNNADIEFPTVTNEEGEKVQLSHGLYGELIQSTDRSVRQEAFKKMYEVYKGLNNTFASTLQS
DVKKNNYLARVHHYDSARHQALSNNHIPESVHDTLLEVVNENLPLLHRYMALRKELLGLDELHMYDLYPPITGDDSLEYS
FEEAKEATYKGLSVLGDEYKAILDKAFNERWIDVVENKGKRSGAYSSGMYDTNPFILLNWHDSLNHLYTLVHELGHSAHS
YFTRNNQPYVYGDYSIFLAEIASTTNENLLTDYLLKKADSPEEKALILSQYLDGFKGTVFRQTQFAEFEHKIHTAAQEKQ
PLTADFLNKTYAEINDKFYGDVVVNDEEIQYEWSRIPHFYMGYYVYQYSTGFCAATALADKILNEEEGALDAYLGYLKSG
SSDYPIEVMKKAGLDMTNKDYLQRAMDVFEQRLNQLEEVVKEIK

Nucleotide


Download         Length: 1815 bp        

>NTDB_id=364263 FE321_RS07150 WP_112768273.1 1505899..1507713(-) (pepF) [Dolosigranulum pigrum strain KPL3033]
ATGTCAGACACAAAACAATTACCAAAACGTCATGAAGTAGAAGAAGCAAAAACATGGGACTTAACAACTATTTATGAAAG
TGATGAAGCTTGGGAGCAGGATTTTGAAGCGATTGATGACTTGAAAGATAAGTTTGTCAACTTCCAAGGTACTTTGGGTG
ACGGGGCCGATAATTTTCTAGCAGCATTTGAGACATTATTGGATCTGAATCGTAAGTTGAGTAAACTCTTTGTATACTCA
CACTTAAAAAGTGATCAAGATACTGAAAATTCAACGTATCAGACCCTTAATGACCGCGCACGCTTGAAATATGCTGAAGT
TGCAGAAGCACGGTCTTGGTTTACGCCAGAATTGCTATCACTCTCACAAGAGACGATTGATCAGTACTTTGTTGAAGCAG
AAGGGCTGCAACCTTACAAACATGAGATTGAAACTATTTTAGCTGATCGAGATCATGTCTTAAGCGCTGAGAAAGAAGCG
TTATTGGCTGGGGCTAGCGATATCTTATCATCTGGAAGCCAAACCTTCTCGATGTTAAATAATGCCGATATTGAATTTCC
AACAGTGACGAATGAAGAAGGCGAGAAAGTCCAATTATCACATGGTTTATACGGAGAGTTGATTCAGAGCACGGATCGAT
CAGTACGCCAGGAAGCCTTCAAGAAAATGTATGAAGTCTACAAAGGCTTAAATAATACATTCGCGTCAACGCTTCAGAGC
GATGTGAAGAAAAATAATTATTTAGCACGTGTGCACCATTACGATTCAGCGCGCCATCAAGCGTTATCGAACAATCACAT
TCCAGAGAGCGTGCATGATACCTTGTTAGAAGTGGTGAATGAGAACTTACCACTCTTACACCGTTATATGGCGTTACGTA
AGGAATTACTGGGTCTTGATGAGTTGCATATGTATGATTTATACCCACCGATTACGGGGGATGATAGCTTAGAGTACTCA
TTTGAAGAAGCAAAAGAGGCAACATACAAAGGGTTAAGTGTATTGGGTGATGAGTACAAAGCGATTTTAGATAAAGCATT
CAATGAGCGTTGGATTGATGTGGTTGAGAATAAAGGGAAGCGCAGTGGAGCGTATTCATCAGGAATGTATGATACAAATC
CGTTTATCTTGCTGAACTGGCATGATTCTTTAAATCACTTGTACACCTTAGTGCATGAATTAGGCCATAGTGCGCACAGT
TACTTCACGCGCAACAATCAGCCGTATGTGTATGGGGACTATTCGATCTTCTTAGCTGAGATCGCCAGCACTACAAACGA
GAATCTATTAACAGATTATCTCTTGAAAAAAGCTGACTCACCTGAAGAGAAAGCTCTCATTCTAAGCCAATACTTAGATG
GATTCAAGGGAACAGTCTTCCGTCAGACACAATTTGCTGAATTCGAGCACAAGATTCACACCGCAGCGCAAGAGAAACAA
CCATTGACTGCTGATTTCTTAAATAAAACCTATGCAGAGATTAATGATAAGTTTTATGGCGATGTTGTAGTTAATGATGA
AGAGATCCAATATGAATGGTCGCGTATTCCGCACTTCTATATGGGTTACTATGTATATCAATACTCAACTGGTTTCTGTG
CAGCTACGGCGTTAGCGGACAAAATCTTAAATGAAGAAGAAGGTGCGTTAGATGCGTACTTAGGTTACTTGAAATCCGGT
AGTAGCGATTATCCGATCGAAGTGATGAAAAAAGCTGGTCTCGACATGACGAACAAAGATTACTTGCAACGAGCGATGGA
TGTCTTCGAACAACGCTTGAATCAGCTAGAGGAAGTTGTTAAAGAAATTAAATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(117-186)

Peptidase family M3 (Peptidase_M3)

(207-587)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

53.704

98.344

0.528

Multiple sequence alignment