Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   FE323_RS07245 Genome accession   NZ_CP040422
Coordinates   1564285..1566099 (-) Length   604 a.a.
NCBI ID   WP_208953196.1    Uniprot ID   -
Organism   Dolosigranulum pigrum strain KPL3050     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1559285..1571099
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FE323_RS07205 (FE323_07135) - 1559481..1559945 (+) 465 WP_208959219.1 GNAT family N-acetyltransferase -
  FE323_RS07210 (FE323_07140) - 1559938..1560390 (+) 453 WP_208959220.1 GNAT family N-acetyltransferase -
  FE323_RS07215 (FE323_07145) - 1560432..1561331 (-) 900 WP_208959221.1 RluA family pseudouridine synthase -
  FE323_RS07220 (FE323_07150) - 1561321..1562133 (-) 813 WP_208959222.1 NAD kinase -
  FE323_RS07225 (FE323_07155) - 1562135..1562763 (-) 629 Protein_1423 GTP pyrophosphokinase family protein -
  FE323_RS09680 (FE323_07160) - 1562856..1563194 (+) 339 WP_208959223.1 CYTH domain-containing protein -
  FE323_RS07240 (FE323_07170) - 1563536..1564162 (+) 627 WP_077862705.1 DsbA family protein -
  FE323_RS07245 (FE323_07175) pepF 1564285..1566099 (-) 1815 WP_208953196.1 oligoendopeptidase F Regulator
  FE323_RS07250 (FE323_07180) - 1566245..1567357 (-) 1113 WP_208953197.1 competence protein CoiA family protein -
  FE323_RS07255 (FE323_07185) - 1567460..1568104 (-) 645 WP_077862708.1 adaptor protein MecA -
  FE323_RS07260 (FE323_07190) - 1568207..1568599 (-) 393 WP_004636723.1 ArsC/Spx/MgsR family protein -
  FE323_RS07265 (FE323_07195) - 1568624..1569643 (-) 1020 WP_111950048.1 lipoate--protein ligase -
  FE323_RS07270 - 1569746..1569919 (-) 174 WP_208953199.1 hypothetical protein -
  FE323_RS07275 - 1569916..1570053 (-) 138 WP_181452736.1 hypothetical protein -

Sequence

Protein


Download         Length: 604 a.a.        Molecular weight: 69459.34 Da        Isoelectric Point: 4.5104

>NTDB_id=364217 FE323_RS07245 WP_208953196.1 1564285..1566099(-) (pepF) [Dolosigranulum pigrum strain KPL3050]
MSDTKQLPKRHEVEEAKTWDLTTIYESDEAWEQDFEAIDDLKDKFVNFQGTLGDGADNFLAAFETLLDLNRKLSKLFVYS
HLKSDQDTENSTYQTLNDRARLKYAEVAEARSWFTPELLSLSQEMIDQYFAEAEGLQPYKHEIETILADRDHILSAEKEA
LLAGASDILSSGSQTFSMLNNADIEFPTVTNEEGEKVQLSHGLYGELIQSTDRSVRQEAFKKMYEVYKGLNNTFASTLQS
DVKKNNYLARVHHYDSARHQALSNNHIPESVHDTLLEVVNENLPLLHRYMALRKELLGLDELHMYDLYPPITGDDSLEYS
FEEAKEATYKGLSVLGDEYKAILDKAFNERWIDVVENKGKRSGAYSSGMYDTNPFILLNWHDSLNHLYTLVHELGHSAHS
YFTRNNQPYVYGDYSIFLAEIASTTNENLLTDYLLKKADSPEEKALILSQYLDGFKGTVFRQTQFAEFEHKIHTAAQEKQ
PLTADFLNKTYAEINDKFYGDVVVNDEEIQYEWSRIPHFYMGYYVYQYSTGFCAATALADKILNEEEGALDAYLGYLKSG
SSDYPIEVMKKAGLDMTNKDYLQRAMDVFEQRLNQLEEVIKEIK

Nucleotide


Download         Length: 1815 bp        

>NTDB_id=364217 FE323_RS07245 WP_208953196.1 1564285..1566099(-) (pepF) [Dolosigranulum pigrum strain KPL3050]
ATGTCAGACACAAAACAATTACCAAAACGTCATGAAGTAGAAGAAGCAAAAACATGGGACTTAACAACCATTTATGAAAG
TGATGAAGCTTGGGAGCAGGATTTTGAAGCGATTGATGACTTGAAAGATAAGTTTGTCAACTTCCAAGGTACTTTGGGTG
ACGGGGCCGATAATTTTCTAGCAGCATTTGAGACATTATTGGATCTGAATCGTAAGTTGAGTAAACTCTTTGTATACTCT
CACTTGAAAAGTGATCAAGATACTGAAAATTCAACGTACCAGACCCTTAATGACCGCGCACGCTTGAAATATGCCGAAGT
TGCAGAAGCACGGTCTTGGTTTACACCAGAATTGCTATCACTCTCACAGGAGATGATTGATCAGTACTTTGCTGAAGCAG
AAGGGCTGCAACCTTACAAACATGAGATTGAAACTATTTTAGCTGATCGAGATCATATCTTAAGCGCTGAGAAAGAAGCG
TTATTGGCTGGGGCTAGCGATATCTTATCATCTGGAAGCCAAACCTTCTCGATGTTAAATAATGCCGATATTGAATTTCC
AACAGTGACGAATGAAGAAGGCGAGAAAGTTCAATTATCACACGGATTATACGGAGAGTTGATTCAGAGCACGGATCGAT
CAGTACGCCAGGAAGCCTTCAAGAAAATGTATGAAGTCTACAAAGGCTTAAATAATACATTCGCGTCAACGCTTCAGAGC
GATGTGAAGAAAAATAATTATTTAGCACGTGTGCACCATTACGATTCAGCGCGCCATCAAGCGTTATCGAACAATCACAT
TCCAGAGAGCGTGCATGATACCTTGTTAGAAGTGGTAAATGAGAACTTACCGCTCTTACACCGTTATATGGCATTACGTA
AGGAATTGCTGGGTCTTGATGAGTTGCATATGTATGATTTATACCCACCGATTACGGGGGATGATAGCTTAGAGTACTCA
TTTGAAGAAGCAAAAGAGGCAACATACAAAGGGTTAAGTGTATTGGGTGATGAGTACAAAGCGATTTTAGATAAAGCATT
CAATGAGCGTTGGATTGATGTGGTTGAGAATAAAGGGAAGCGCAGTGGAGCGTATTCATCAGGAATGTATGATACGAATC
CATTTATCTTGCTGAACTGGCATGATTCTTTAAATCACTTGTACACCTTAGTACATGAATTGGGCCATAGTGCGCACAGT
TACTTCACGCGCAACAATCAGCCGTATGTGTATGGGGACTATTCGATCTTCTTAGCTGAGATCGCCAGCACTACAAACGA
GAATCTATTAACAGATTATCTCTTGAAAAAAGCTGACTCACCTGAAGAAAAAGCTCTCATTCTAAGCCAATATTTAGATG
GATTCAAGGGAACAGTCTTCCGTCAGACACAATTTGCTGAATTCGAGCACAAGATTCACACCGCAGCGCAAGAGAAACAA
CCATTGACTGCTGATTTCTTAAATAAAACCTATGCAGAGATTAATGATAAGTTTTATGGCGATGTTGTAGTTAATGATGA
AGAGATCCAATATGAATGGTCGCGTATTCCGCACTTCTATATGGGTTACTATGTATATCAATACTCAACTGGTTTCTGTG
CAGCTACGGCGTTAGCGGACAAAATCTTAAATGAAGAAGAAGGTGCGCTAGATGCGTACTTAGGTTACTTGAAATCCGGT
AGTAGCGATTATCCGATCGAAGTGATGAAAAAAGCTGGTCTCGACATGACGAACAAAGATTACTTGCAACGAGCTATGGA
TGTCTTCGAACAACGCTTGAACCAGCTAGAGGAAGTTATTAAAGAAATTAAATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(117-186)

Peptidase family M3 (Peptidase_M3)

(207-587)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

53.367

98.344

0.525

Multiple sequence alignment