Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   FE326_RS07540 Genome accession   NZ_CP040419
Coordinates   1548776..1550590 (-) Length   604 a.a.
NCBI ID   WP_112786966.1    Uniprot ID   -
Organism   Dolosigranulum pigrum strain KPL3069     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1543776..1555590
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FE326_RS07505 (FE326_07425) - 1543971..1544435 (+) 465 WP_208953194.1 GNAT family N-acetyltransferase -
  FE326_RS07510 (FE326_07430) - 1544428..1544880 (+) 453 WP_208954076.1 GNAT family N-acetyltransferase -
  FE326_RS07515 (FE326_07435) - 1544922..1545821 (-) 900 WP_208954077.1 RluA family pseudouridine synthase -
  FE326_RS07520 (FE326_07440) - 1545811..1546623 (-) 813 WP_004636716.1 NAD kinase -
  FE326_RS07525 (FE326_07445) - 1546625..1547254 (-) 630 WP_004636717.1 GTP pyrophosphokinase family protein -
  FE326_RS07530 (FE326_07450) - 1547347..1547934 (+) 588 WP_208954078.1 CYTH domain-containing protein -
  FE326_RS07535 (FE326_07455) - 1548028..1548654 (+) 627 WP_208954079.1 DsbA family protein -
  FE326_RS07540 (FE326_07460) pepF 1548776..1550590 (-) 1815 WP_112786966.1 oligoendopeptidase F Regulator
  FE326_RS07545 (FE326_07465) - 1550738..1551850 (-) 1113 WP_208954080.1 competence protein CoiA family protein -
  FE326_RS07550 (FE326_07470) - 1551953..1552597 (-) 645 WP_077862708.1 adaptor protein MecA -
  FE326_RS07555 (FE326_07475) - 1552700..1553092 (-) 393 WP_004636723.1 ArsC/Spx/MgsR family protein -
  FE326_RS07560 (FE326_07480) - 1553117..1554136 (-) 1020 WP_004636724.1 lipoate--protein ligase -
  FE326_RS07565 - 1554239..1554412 (-) 174 WP_208954081.1 hypothetical protein -
  FE326_RS07570 - 1554409..1554546 (-) 138 WP_208954082.1 hypothetical protein -

Sequence

Protein


Download         Length: 604 a.a.        Molecular weight: 69443.28 Da        Isoelectric Point: 4.5104

>NTDB_id=364148 FE326_RS07540 WP_112786966.1 1548776..1550590(-) (pepF) [Dolosigranulum pigrum strain KPL3069]
MSDTKQLPKRHEVEEAKTWDLTTIYESDEAWEQDFEAIDDLKDKFVNFQGTLGDGADNFLAAFETLLDLNRKLSKLFVYS
HLKSDQDTENSTYQTLNDRARLKYAEVAEARSWFTPELLSLSQETIDQYFIEAEGLQPYKHEIETILADRDHVLSAEKEA
LLAGASDILSSGSQTFSMLNNADIEFPTVTNEEGEKVQLSHGLYGELIQSTDRSVRQEAFKKMYEVYKGLNNTFASTLQS
DVKKNNYLARVHHYDSARHQALSNNHIPESVHDTLLEVVNENLPLLHRYMALRKELLGLDELHMYDLYPPITGDDSLEYS
FEEAKEATYKGLSVLGDEYKAILDKAFNERWIDVVENKGKRSGAYSSGMYDTNPFILLNWHDSLNHLYTLVHELGHSAHS
YFTRNNQPYVYGDYSIFLAEIASTTNENLLTDYLLKKADSPEEKALILSQYLDGFKGTVFRQTQFAEFEHKIHTAAQEKQ
PLTADFLNKTYAEINDKFYGDVVVNDEEIQYEWSRIPHFYMGYYVYQYSTGFCAATALADKILNEEEGALDAYLGYLKSG
SSDYPIEVMKKAGLDMTNKDYLQRAMDVFEQRLNQLEEVVKEIK

Nucleotide


Download         Length: 1815 bp        

>NTDB_id=364148 FE326_RS07540 WP_112786966.1 1548776..1550590(-) (pepF) [Dolosigranulum pigrum strain KPL3069]
ATGTCAGACACAAAACAATTACCAAAACGTCATGAAGTAGAAGAAGCAAAAACATGGGATTTAACAACTATTTATGAAAG
TGATGAAGCTTGGGAGCAGGATTTTGAAGCGATTGATGACTTGAAAGATAAGTTTGTCAACTTCCAAGGTACTTTGGGTG
ACGGGGCCGATAATTTTCTAGCAGCATTTGAGACATTATTGGATCTAAATCGTAAGTTGAGTAAACTCTTTGTATACTCT
CACTTAAAAAGTGATCAAGATACTGAAAATTCAACGTATCAGACCCTTAATGACCGCGCACGCTTGAAATATGCTGAAGT
TGCAGAAGCACGGTCTTGGTTTACGCCAGAATTGCTATCACTCTCACAGGAGACGATTGATCAGTACTTTATTGAAGCAG
AAGGGCTGCAACCTTACAAACATGAGATTGAAACTATTTTAGCTGATCGAGATCATGTCTTAAGCGCTGAGAAAGAAGCG
TTATTGGCTGGGGCTAGCGATATCTTATCATCTGGAAGCCAAACCTTCTCGATGTTAAATAATGCCGATATTGAATTTCC
AACAGTGACGAATGAAGAAGGCGAGAAAGTTCAATTATCACACGGTTTATACGGAGAGTTGATTCAAAGCACGGATCGAT
CAGTACGCCAGGAAGCCTTCAAGAAAATGTATGAAGTTTACAAAGGCTTAAATAATACATTCGCGTCAACGCTTCAGAGC
GATGTGAAGAAAAATAATTATTTAGCACGTGTGCACCATTACGATTCAGCGCGCCATCAAGCGTTATCGAACAATCATAT
TCCAGAGAGCGTGCATGATACCTTGTTAGAAGTGGTAAATGAGAACTTACCACTCTTACACCGTTATATGGCATTACGTA
AGGAATTACTGGGTCTTGATGAGTTGCATATGTATGATTTGTATCCACCGATTACGGGGGATGATAGCTTAGAGTACTCA
TTTGAAGAAGCAAAAGAGGCAACATACAAAGGGTTAAGTGTATTGGGTGATGAGTACAAAGCGATTTTAGATAAAGCATT
CAATGAGCGTTGGATTGATGTGGTTGAGAATAAAGGGAAGCGCAGTGGAGCGTATTCATCAGGAATGTATGATACGAATC
CGTTTATCTTGCTGAACTGGCATGATTCTTTAAATCACTTGTACACCTTAGTACACGAACTGGGACATAGTGCGCACAGT
TACTTCACGCGCAACAATCAGCCGTATGTGTATGGGGACTATTCGATCTTCTTAGCTGAGATCGCCAGCACTACAAACGA
GAATCTATTAACAGATTATCTCTTGAAAAAAGCTGACTCGCCTGAAGAGAAAGCTCTCATTCTAAGCCAATACTTAGATG
GATTCAAGGGAACAGTCTTCCGTCAGACACAATTTGCTGAATTCGAGCACAAGATTCACACCGCAGCGCAAGAGAAACAA
CCATTGACTGCTGATTTCTTAAATAAAACCTATGCAGAGATTAATGATAAGTTTTATGGCGATGTTGTAGTTAATGATGA
AGAGATCCAATATGAATGGTCGCGTATTCCGCACTTCTATATGGGTTACTATGTCTATCAATACTCAACTGGTTTCTGTG
CAGCTACGGCGTTAGCGGACAAAATCTTAAATGAAGAAGAAGGTGCGCTAGATGCGTACTTAGGTTACTTGAAATCCGGT
AGTAGCGATTATCCGATCGAAGTGATGAAAAAAGCTGGTCTCGACATGACGAACAAAGATTACTTGCAACGAGCTATGGA
TGTCTTCGAACAACGCTTGAACCAGCTAGAGGAAGTTGTTAAAGAAATTAAATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(207-587)

Oligopeptidase F (Peptidase_M3_N)

(117-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

53.704

98.344

0.528

Multiple sequence alignment