Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   FE330_RS02725 Genome accession   NZ_CP040415
Coordinates   565518..566627 (+) Length   369 a.a.
NCBI ID   WP_004636634.1    Uniprot ID   -
Organism   Dolosigranulum pigrum strain KPL3086     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 560518..571627
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FE330_RS02705 (FE330_02725) - 561402..562694 (+) 1293 WP_208953595.1 pitrilysin family protein -
  FE330_RS02710 (FE330_02730) - 562732..563574 (+) 843 WP_112788228.1 helix-turn-helix domain-containing protein -
  FE330_RS02715 (FE330_02735) pgsA 563584..564162 (+) 579 WP_111949380.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  FE330_RS02720 (FE330_02740) - 564256..565437 (+) 1182 WP_208953596.1 CinA family nicotinamide mononucleotide deamidase-related protein -
  FE330_RS02725 (FE330_02745) recA 565518..566627 (+) 1110 WP_004636634.1 recombinase RecA Machinery gene
  FE330_RS02730 (FE330_02750) rny 566942..568504 (+) 1563 WP_111949278.1 ribonuclease Y -
  FE330_RS02735 (FE330_02755) - 568571..569119 (-) 549 WP_004636632.1 hypothetical protein -
  FE330_RS02740 (FE330_02760) - 569231..569758 (-) 528 WP_112788229.1 transcription repressor NadR -
  FE330_RS02745 (FE330_02765) - 569904..570554 (+) 651 WP_111950939.1 hypothetical protein -
  FE330_RS02750 (FE330_02770) secG 570621..570851 (+) 231 WP_004636629.1 preprotein translocase subunit SecG -

Sequence

Protein


Download         Length: 369 a.a.        Molecular weight: 40114.45 Da        Isoelectric Point: 4.5233

>NTDB_id=364068 FE330_RS02725 WP_004636634.1 565518..566627(+) (recA) [Dolosigranulum pigrum strain KPL3086]
MVSEERQKALDKALKNIEKNFGKGSIMKMGEKVDTEVRSVPSGSLALDVALGIGGYPRGRIIEVYGPESSGKTTVALHAI
AAVQEEGGVAAFIDAEHALDPKYARALGVDVDELLLSQPDTGEQALEITDALVASGAIDIIVVDSVAALVPRAEIDGEMG
DAHVGLQARLMSQALRKLSGSINKTKTICMFINQIREKIGVMFGNPETTPGGRALKFYSSVRLEVRRAEKIKSGSDLTGN
RTKIKIVKNKVAPPFKTAMVDIMYGQGISQVGELVDMGADADVITKAGAWYSYGEERLGQGRENAKEFLEENLEIRKEID
RKVRLAYGVIDEEEFERLQQLAAERAEQASELEVDEEIEETEDNTSADE

Nucleotide


Download         Length: 1110 bp        

>NTDB_id=364068 FE330_RS02725 WP_004636634.1 565518..566627(+) (recA) [Dolosigranulum pigrum strain KPL3086]
ATGGTATCAGAGGAACGTCAGAAAGCGCTAGATAAAGCATTGAAAAATATTGAGAAGAATTTCGGTAAAGGATCCATTAT
GAAAATGGGTGAGAAAGTCGATACGGAGGTGCGTTCAGTTCCAAGTGGGTCATTGGCACTAGATGTTGCACTGGGTATTG
GTGGCTATCCACGGGGGCGTATTATTGAAGTATATGGACCAGAAAGTTCTGGTAAGACCACTGTAGCGCTACATGCAATT
GCAGCTGTACAAGAAGAAGGTGGGGTAGCGGCCTTTATCGATGCTGAGCACGCCTTGGATCCGAAATATGCTCGAGCACT
TGGTGTCGATGTGGATGAATTATTACTTTCACAGCCAGATACTGGAGAGCAAGCATTAGAAATTACAGATGCATTAGTAG
CTAGTGGGGCGATTGATATTATTGTTGTTGACTCAGTTGCGGCACTTGTTCCACGTGCTGAGATTGATGGTGAGATGGGG
GATGCCCATGTAGGATTGCAAGCGCGTCTGATGTCACAAGCATTGCGTAAGCTATCTGGTTCAATTAATAAAACAAAGAC
AATTTGTATGTTCATCAACCAGATTCGCGAAAAAATTGGTGTTATGTTCGGAAATCCTGAGACAACACCAGGTGGGCGCG
CTTTGAAATTTTACTCATCAGTTCGTTTAGAAGTTCGTCGAGCTGAAAAAATTAAATCAGGTTCTGATCTAACCGGTAAC
CGAACTAAAATTAAAATTGTCAAAAATAAGGTAGCCCCACCATTTAAAACAGCAATGGTTGATATTATGTATGGACAAGG
TATCTCGCAAGTTGGTGAGCTCGTCGATATGGGAGCTGATGCTGATGTGATTACTAAAGCAGGTGCATGGTATTCTTATG
GGGAAGAACGTCTTGGTCAAGGACGTGAGAATGCAAAAGAGTTCTTAGAAGAAAACCTTGAAATCAGAAAAGAGATTGAT
CGTAAGGTACGGTTAGCTTATGGCGTAATTGATGAAGAAGAGTTTGAGCGACTGCAACAATTGGCAGCAGAGAGAGCAGA
ACAAGCTTCAGAACTCGAAGTAGATGAAGAAATTGAAGAGACGGAAGACAATACGTCAGCTGATGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

76.347

90.515

0.691
  recA Bacillus subtilis subsp. subtilis str. 168

76.923

88.076

0.678
  recA Streptococcus pneumoniae Rx1

66.76

97.019

0.648
  recA Streptococcus pneumoniae D39

66.76

97.019

0.648
  recA Streptococcus pneumoniae R6

66.76

97.019

0.648
  recA Streptococcus pneumoniae TIGR4

66.76

97.019

0.648
  recA Streptococcus mutans UA159

65.659

98.645

0.648
  recA Streptococcus mitis NCTC 12261

66.295

97.29

0.645
  recA Streptococcus pyogenes NZ131

65.833

97.561

0.642
  recA Streptococcus mitis SK321

69.461

90.515

0.629
  recA Lactococcus lactis subsp. cremoris KW2

65.868

90.515

0.596
  recA Neisseria gonorrhoeae strain FA1090

63.83

89.16

0.569
  recA Neisseria gonorrhoeae MS11

63.83

89.16

0.569
  recA Neisseria gonorrhoeae MS11

63.83

89.16

0.569
  recA Vibrio cholerae O1 biovar El Tor strain E7946

58.496

97.29

0.569
  recA Vibrio cholerae strain A1552

58.496

97.29

0.569
  recA Ralstonia pseudosolanacearum GMI1000

65.815

84.824

0.558
  recA Acinetobacter baumannii D1279779

61.92

87.534

0.542
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.538

88.076

0.542
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.061

88.889

0.534
  recA Acinetobacter baylyi ADP1

60.681

87.534

0.531
  recA Pseudomonas stutzeri DSM 10701

61.059

86.992

0.531
  recA Glaesserella parasuis strain SC1401

61.059

86.992

0.531
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.574

89.16

0.531
  recA Helicobacter pylori 26695

59.146

88.889

0.526
  recA Helicobacter pylori strain NCTC11637

58.841

88.889

0.523

Multiple sequence alignment