Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   FE331_RS07265 Genome accession   NZ_CP040414
Coordinates   1532742..1534556 (-) Length   604 a.a.
NCBI ID   WP_208967521.1    Uniprot ID   -
Organism   Dolosigranulum pigrum strain KPL3090     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1527742..1539556
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FE331_RS07230 (FE331_07205) - 1527937..1528401 (+) 465 WP_201711508.1 GNAT family N-acetyltransferase -
  FE331_RS07235 (FE331_07210) - 1528394..1528846 (+) 453 WP_201711509.1 GNAT family N-acetyltransferase -
  FE331_RS07240 (FE331_07215) - 1528888..1529787 (-) 900 WP_208967519.1 RluA family pseudouridine synthase -
  FE331_RS07245 (FE331_07220) - 1529777..1530589 (-) 813 WP_111952261.1 NAD kinase -
  FE331_RS07250 (FE331_07225) - 1530591..1531220 (-) 630 WP_112788159.1 GTP pyrophosphokinase family protein -
  FE331_RS07255 (FE331_07230) - 1531313..1531900 (+) 588 WP_208967520.1 CYTH domain-containing protein -
  FE331_RS07260 (FE331_07235) - 1531994..1532620 (+) 627 WP_004636719.1 DsbA family protein -
  FE331_RS07265 (FE331_07240) pepF 1532742..1534556 (-) 1815 WP_208967521.1 oligoendopeptidase F Regulator
  FE331_RS07270 (FE331_07245) - 1534702..1535814 (-) 1113 WP_004636721.1 competence protein CoiA family protein -
  FE331_RS07275 (FE331_07250) - 1535917..1536561 (-) 645 WP_077862708.1 adaptor protein MecA -
  FE331_RS07280 (FE331_07255) - 1536664..1537056 (-) 393 WP_004636723.1 ArsC/Spx/MgsR family protein -
  FE331_RS07285 (FE331_07260) - 1537081..1538100 (-) 1020 WP_208967522.1 lipoate--protein ligase -

Sequence

Protein


Download         Length: 604 a.a.        Molecular weight: 69429.25 Da        Isoelectric Point: 4.5335

>NTDB_id=364054 FE331_RS07265 WP_208967521.1 1532742..1534556(-) (pepF) [Dolosigranulum pigrum strain KPL3090]
MSDTKQLPKRHEVEEAKTWDLTTIYESDEAWERDFEAIDDLKDKFVNFQGTLGDGADNFLAAFETLLDLNRKLSKLFVYS
HLKSDQDTENSTYQTLNDRARLKYAEVAEARSWFTPELLSLSQETIDQYFAEAEGLQPYKHEIETILADRDHVLSAEKEA
LLAGASDILSSGSQTFSMLNNADIEFPTVTNEEGEKVQLSHGLYGELIQSTDRSVRQEAFKKMYEVYKGLNNTFASTLQS
DVKKNNYLARVHHYDSARHQALSNNHIPESVHDTLLEVVNENLPLLHRYMALRKELLGLDELHMYDLYPPITGDDSLEYS
FEEAKEATYKGLSVLGDEYKAILDKAFNERWIDVVENKGKRSGAYSSGMYDTNPFILLNWHDSLNHLYTLVHELGHSAHS
YFTRNNQPYVYGDYSIFLAEIASTTNENLLTDYLLKKADSPEEKALILSQYLDGFKGTVFRQTQFAEFEHKIHTAAQEKQ
PLTADFLNKTYAEINDKFYGDVVVNDEEIQYEWSRIPHFYMGYYVYQYSTGFCAATALADKILNEEEGALDAYLGYLKSG
SSDYPIEVMKKAGLDMTNKDYLQRAMDVFEQRLNQLEEVVKEIK

Nucleotide


Download         Length: 1815 bp        

>NTDB_id=364054 FE331_RS07265 WP_208967521.1 1532742..1534556(-) (pepF) [Dolosigranulum pigrum strain KPL3090]
ATGTCAGACACAAAACAATTACCAAAACGTCATGAAGTAGAAGAAGCAAAAACATGGGACTTAACAACTATTTATGAAAG
TGATGAAGCTTGGGAACGAGATTTTGAAGCGATTGATGACTTGAAAGATAAGTTTGTCAACTTCCAAGGTACTTTGGGTG
ACGGGGCTGATAATTTTCTAGCAGCATTTGAGACATTATTGGATCTGAATCGTAAGTTGAGTAAACTCTTTGTATACTCA
CACTTAAAAAGTGATCAAGATACTGAAAATTCAACGTATCAGACCCTTAATGACCGCGCACGCTTAAAATATGCTGAAGT
TGCAGAAGCACGGTCTTGGTTTACACCAGAATTGCTATCACTCTCACAGGAGACGATTGATCAATACTTTGCTGAAGCAG
AAGGGCTGCAACCTTACAAACATGAAATTGAAACAATTTTAGCTGATCGAGATCATGTCTTAAGCGCTGAGAAAGAAGCG
TTATTGGCTGGGGCTAGCGATATCTTATCATCTGGAAGCCAAACCTTCTCGATGTTAAATAATGCCGATATTGAATTTCC
AACAGTGACGAATGAAGAAGGCGAGAAAGTCCAATTATCACACGGTTTATACGGAGAGTTGATTCAAAGCACGGATCGAT
CAGTACGCCAGGAAGCCTTCAAGAAAATGTATGAAGTCTACAAAGGCTTAAATAATACATTCGCGTCAACGCTTCAGAGC
GATGTGAAGAAAAATAATTATTTAGCACGTGTGCACCATTACGATTCAGCGCGCCATCAAGCGTTATCGAACAATCACAT
TCCAGAGAGCGTGCATGATACCTTGTTAGAAGTGGTGAATGAGAACTTACCACTCTTACACCGTTATATGGCATTACGTA
AGGAATTACTGGGTCTTGATGAGTTGCATATGTATGATTTATACCCACCGATTACGGGGGATGATAGCTTAGAGTACTCA
TTTGAAGAAGCAAAAGAGGCAACATACAAAGGGTTAAGTGTATTGGGTGATGAGTACAAAGCGATTTTAGATAAAGCATT
CAATGAGCGTTGGATTGATGTGGTTGAGAATAAAGGGAAGCGCAGTGGAGCGTATTCATCAGGAATGTATGATACGAATC
CGTTTATCTTGCTGAACTGGCATGATTCTTTAAATCACTTGTACACCTTAGTACACGAACTGGGCCATAGTGCGCACAGT
TACTTCACGCGCAACAATCAGCCGTATGTGTATGGGGACTATTCGATCTTCTTAGCTGAGATCGCCAGCACTACAAACGA
GAATCTATTAACAGATTATCTCTTGAAAAAAGCTGACTCACCTGAAGAAAAAGCTCTCATTCTAAGCCAATACTTAGATG
GATTCAAGGGAACAGTCTTCCGTCAGACACAATTTGCTGAATTCGAGCACAAAATTCATACCGCAGCGCAAGAGAAACAA
CCATTGACTGCTGATTTCTTAAATAAAACCTATGCAGAGATTAATGATAAGTTTTATGGCGATGTTGTAGTTAATGATGA
AGAGATCCAATATGAATGGTCGCGTATTCCGCACTTCTATATGGGTTACTATGTATATCAATACTCAACTGGTTTCTGTG
CAGCTACAGCGTTAGCGGACAAAATCTTAAATGAAGAAGAAGGTGCGCTAGATGCGTACTTAGGTTATTTGAAATCTGGT
AGTAGCGATTATCCGATCGAAGTGATGAAAAAAGCTGGTCTCGACATGACGAATAAAGATTACTTGCAACGAGCGATGGA
TGTCTTCGAACAACGCTTGAACCAGCTAGAGGAAGTTGTTAAAGAAATTAAATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(207-587)

Oligopeptidase F (Peptidase_M3_N)

(117-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

53.704

98.344

0.528

Multiple sequence alignment