Detailed information NTG0364038

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: FE331_RS00915
• Genome accession: NZ_CP040414
• Coordinates: 148243..149619 (+)
• Length: 458 a.a.
• NCBI ID: WP_208966495.1
• Uniprot ID: -
• Organism: Dolosigranulum pigrum strain KPL3090
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 143243..154619

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FE331_RS00890 (FE331_00860)	-	144586..144945 (+)	360	WP_208967821.1	SbcC/MukB-like Walker B domain-containing protein	-
FE331_RS00895 (FE331_00865)	pgeF	144971..145699 (+)	729	WP_208966492.1	peptidoglycan editing factor PgeF	-
FE331_RS00900 (FE331_00870)	-	145819..146130 (-)	312	WP_208966493.1	iron-sulfur cluster biosynthesis protein	-
FE331_RS00905 (FE331_00875)	ugpC	146408..147517 (+)	1110	WP_004635212.1	sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	-
FE331_RS00910 (FE331_00880)	-	147654..148190 (+)	537	WP_208966494.1	dUTP diphosphatase	-
FE331_RS00915 (FE331_00885)	radA	148243..149619 (+)	1377	WP_208966495.1	DNA repair protein RadA	Machinery gene
FE331_RS00920 (FE331_00890)	-	149666..150769 (+)	1104	WP_004635206.1	PIN/TRAM domain-containing protein	-
FE331_RS00925 (FE331_00895)	-	150841..151215 (-)	375	WP_208957393.1	hypothetical protein	-
FE331_RS00930 (FE331_00900)	-	151266..152012 (-)	747	WP_208967822.1	LytTR family DNA-binding domain-containing protein	-
FE331_RS00935 (FE331_00905)	-	152829..153038 (+)	210	WP_208953401.1	hypothetical protein	-
FE331_RS00940 (FE331_00910)	-	153754..154401 (+)	648	WP_208967823.1	type II CAAX endopeptidase family protein	-

Sequence

Protein

• Length: 458 a.a.
• Molecular weight: 50103.32 Da
• Isoelectric Point: 6.0785

>NTDB_id=364038 FE331_RS00915 WP_208966495.1 148243..149619(+) (radA) [Dolosigranulum pigrum strain KPL3090]
MAKKKVNFMCNECGIESPKYLGRCPSCGAWDSFVEAPKAADEDQKDNRKRVSLTGERATPTLITEVEVEREDRVTVPFSE
FNRVLGGGIVPGSLVLIGGDPGIGKSTLLLQISAFLNNQGAKVLYVSGEESASQIKMRAERLEVVGANFYLYAETDLSYI
QDAIQKLRPNFVIVDSIQTMHHPNIDSASGSVSQVRESTATLMQLAKTNDIGIFIVGHVTKEGSIAGPRMLEHMVDTVLY
FEGEQHHTFRVLRAVKNRFGSTNEIGIFEMNEDGLKEVHNPSQLFLEERLAGTNGSAVVAAMEGTRPILVEIQSLIAPTA
FGHAKRTASGLDYSRVSLIMAVLEKRAGLLLQNYDAYLKAAGGVKLDEPAIDLSIAMSIVSSYKEKETQATDCFIGEIGL
TGEIRRVSKIEARVTEAAKLGFKRVFIPKNNIDGWTHPEGIEVIGCATVSEVMKRTFN

Nucleotide

• Length: 1377 bp

>NTDB_id=364038 FE331_RS00915 WP_208966495.1 148243..149619(+) (radA) [Dolosigranulum pigrum strain KPL3090]
ATGGCGAAGAAAAAAGTAAATTTCATGTGCAACGAGTGTGGGATTGAATCTCCGAAGTATTTGGGAAGATGTCCATCTTG
CGGGGCGTGGGATTCCTTCGTAGAAGCGCCAAAAGCAGCGGACGAAGACCAAAAAGATAACCGCAAAAGGGTCTCCTTAA
CAGGGGAGAGAGCGACACCGACCTTAATTACAGAGGTAGAAGTAGAGCGTGAAGATCGTGTGACAGTCCCTTTCAGTGAG
TTCAACCGTGTGCTGGGAGGCGGGATTGTCCCAGGCTCACTCGTCTTGATCGGAGGAGATCCCGGCATTGGGAAGTCCAC
CCTGTTGCTTCAGATCTCAGCTTTCTTGAATAATCAAGGGGCGAAGGTGCTCTACGTTTCGGGGGAAGAGAGTGCTAGCC
AAATTAAGATGCGAGCGGAACGCTTAGAAGTTGTCGGGGCGAACTTTTACTTATATGCGGAGACTGATTTGAGTTATATT
CAAGATGCGATTCAGAAGTTGCGACCGAACTTTGTTATTGTGGATTCGATTCAGACGATGCACCATCCGAATATTGATAG
TGCATCTGGTAGTGTATCGCAAGTGCGTGAATCGACCGCTACCTTGATGCAGCTCGCGAAGACGAATGATATTGGGATCT
TCATTGTTGGTCACGTGACGAAGGAAGGCTCGATTGCGGGGCCACGTATGTTAGAGCATATGGTGGACACTGTGCTTTAC
TTCGAAGGGGAACAACATCATACGTTCCGAGTCTTGCGCGCCGTGAAAAATCGGTTCGGTTCGACTAACGAGATTGGTAT
CTTCGAGATGAATGAAGATGGACTAAAAGAAGTGCATAATCCGAGTCAGCTATTCTTAGAAGAGCGGCTGGCGGGGACGA
ATGGCTCAGCCGTTGTTGCTGCAATGGAGGGAACGCGTCCGATTTTAGTAGAGATTCAGTCGCTCATTGCCCCGACTGCC
TTTGGTCATGCCAAGCGAACTGCAAGCGGCCTGGATTATTCGCGCGTCTCCTTAATCATGGCTGTATTGGAGAAGCGAGC
AGGCCTTTTATTACAAAATTATGATGCCTACTTGAAGGCAGCAGGTGGAGTGAAGTTAGATGAGCCGGCGATTGACTTAA
GTATCGCGATGAGCATCGTCTCCAGCTATAAGGAAAAAGAAACCCAAGCCACGGATTGCTTTATCGGAGAGATTGGCTTA
ACTGGCGAAATTCGACGAGTCTCTAAAATTGAAGCACGGGTTACGGAAGCAGCTAAGTTAGGCTTCAAGCGTGTCTTTAT
TCCCAAGAATAATATAGACGGCTGGACGCATCCTGAGGGTATCGAAGTCATCGGCTGTGCCACTGTCTCAGAAGTAATGA
AGCGAACATTTAACTAA

Domains

Predicted by InterproScan.

• AAA domain (AAA_25) (72-223)

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (8-35)

• Subunit ChlI of Mg-chelatase (ChlI) (365-431)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Streptococcus mitis NCTC 12261	65.427	99.782	0.653
radA	Streptococcus pneumoniae Rx1	65.427	99.782	0.653
radA	Streptococcus pneumoniae D39	65.427	99.782	0.653
radA	Streptococcus pneumoniae R6	65.427	99.782	0.653
radA	Streptococcus pneumoniae TIGR4	65.427	99.782	0.653
radA	Streptococcus mitis SK321	65.427	99.782	0.653
radA	Bacillus subtilis subsp. subtilis str. 168	63.974	100	0.64