Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   FE332_RS06725 Genome accession   NZ_CP040413
Coordinates   1466935..1468749 (-) Length   604 a.a.
NCBI ID   WP_111973579.1    Uniprot ID   -
Organism   Dolosigranulum pigrum strain KPL3246     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1461935..1473749
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FE332_RS06690 (FE332_06700) - 1462131..1462595 (+) 465 WP_111973574.1 GNAT family N-acetyltransferase -
  FE332_RS06695 (FE332_06705) - 1462588..1463040 (+) 453 WP_111973575.1 GNAT family N-acetyltransferase -
  FE332_RS06700 (FE332_06710) - 1463082..1463981 (-) 900 WP_111973576.1 RluA family pseudouridine synthase -
  FE332_RS06705 (FE332_06715) - 1463971..1464783 (-) 813 WP_004636716.1 NAD kinase -
  FE332_RS06710 (FE332_06720) - 1464785..1465414 (-) 630 WP_004636717.1 GTP pyrophosphokinase family protein -
  FE332_RS06715 (FE332_06725) - 1465507..1466094 (+) 588 WP_111973577.1 CYTH domain-containing protein -
  FE332_RS06720 (FE332_06730) - 1466188..1466814 (+) 627 WP_111973578.1 DsbA family protein -
  FE332_RS06725 (FE332_06735) pepF 1466935..1468749 (-) 1815 WP_111973579.1 oligoendopeptidase F Regulator
  FE332_RS06730 (FE332_06740) - 1468895..1470007 (-) 1113 WP_208969107.1 competence protein CoiA family protein -
  FE332_RS06735 (FE332_06745) - 1470110..1470754 (-) 645 WP_111973581.1 adaptor protein MecA -
  FE332_RS06740 (FE332_06750) - 1470856..1471248 (-) 393 WP_004636723.1 ArsC/Spx/MgsR family protein -
  FE332_RS06745 (FE332_06755) - 1471273..1472292 (-) 1020 WP_004636724.1 lipoate--protein ligase -
  FE332_RS06750 - 1472565..1472702 (-) 138 WP_181452736.1 hypothetical protein -

Sequence

Protein


Download         Length: 604 a.a.        Molecular weight: 69457.31 Da        Isoelectric Point: 4.5335

>NTDB_id=364030 FE332_RS06725 WP_111973579.1 1466935..1468749(-) (pepF) [Dolosigranulum pigrum strain KPL3246]
MSDTKQLPKRHEVEEAKTWDLTTIYESDEAWERDFEAIDDLKDKFVNFQGTLGDGADNFLAAFETLLDLNRKLSKLFVYS
HLKSDQDTENSTYQTLNDRARLKYAEVAEARSWFTPELLSLSQETIDQYFVEAEGLQPYKHEIETILADRDHVLSAEKEA
LLAGASDILSSGSQTFSMLNNADIEFPTVTNEEGEKVQLSHGLYGELIQSTDRSVRQEAFKKMYEVYKGLNNTFASTLQS
DVKKNNYLARVHHYDSARHQALSNNHIPESVHDTLLEVVNENLPLLHRYMALRKELLGLDELHMYDLYPPITGDDSLEYS
FEEAKEATYKGLSVLGDEYKAILDKAFNERWIDVVENKGKRSGAYSSGMYDTNPFILLNWHDSLNHLYTLVHELGHSAHS
YFTRNNQPYVYGDYSIFLAEIASTTNENLLTDYLLKKADSPEEKALILSQYLDGFKGTVFRQTQFAEFEHKIHTAAQEKQ
PLTADFLNKTYAEINDKFYGDVVVNDEEIQYEWSRIPHFYMGYYVYQYSTGFCAATALADKILNEEEGALDAYLGYLKSG
SSDYPIEVMKKAGLDMTNKDYLQRAMDVFEQRLNQLEEVVKEIK

Nucleotide


Download         Length: 1815 bp        

>NTDB_id=364030 FE332_RS06725 WP_111973579.1 1466935..1468749(-) (pepF) [Dolosigranulum pigrum strain KPL3246]
ATGTCAGACACAAAACAATTACCAAAACGTCATGAAGTAGAAGAAGCAAAAACATGGGATTTAACAACTATTTATGAAAG
TGATGAAGCTTGGGAACGAGATTTTGAAGCGATTGATGACTTGAAAGATAAGTTTGTCAACTTCCAAGGTACTTTGGGTG
ACGGGGCCGATAATTTTCTAGCAGCATTTGAGACATTATTGGATCTGAATCGTAAGTTGAGTAAACTCTTTGTATACTCT
CATTTGAAAAGTGATCAAGATACTGAAAATTCAACGTATCAGACCCTTAATGACCGCGCACGCTTGAAATATGCTGAAGT
TGCAGAAGCACGGTCTTGGTTTACGCCAGAATTGCTATCACTCTCACAAGAGACGATTGATCAGTACTTTGTTGAAGCAG
AAGGGCTGCAACCTTACAAACATGAGATTGAAACTATTTTAGCTGATCGAGATCATGTCTTAAGCGCTGAGAAAGAAGCG
TTATTGGCTGGGGCTAGCGATATCTTATCATCTGGAAGCCAAACCTTCTCGATGTTAAATAATGCCGATATTGAATTTCC
AACAGTGACGAATGAAGAAGGCGAGAAAGTTCAATTATCACACGGATTATACGGAGAGTTGATTCAGAGCACGGATCGAT
CAGTACGCCAGGAAGCCTTCAAGAAAATGTATGAAGTCTACAAAGGCTTAAATAATACATTCGCGTCAACGCTTCAGAGC
GATGTGAAGAAAAATAATTATTTAGCACGTGTGCACCATTACGATTCAGCGCGCCATCAAGCGTTATCGAATAATCACAT
TCCAGAGAGCGTGCATGATACCTTGTTAGAAGTGGTGAATGAGAACTTACCACTCTTACACCGTTATATGGCATTACGTA
AGGAATTACTAGGTCTTGATGAGTTGCATATGTATGATTTGTATCCACCGATTACGGGGGATGATAGCTTAGAGTACTCA
TTTGAAGAAGCAAAAGAGGCAACATACAAAGGGTTAAGTGTATTGGGTGATGAGTACAAAGCGATTTTAGATAAAGCATT
CAATGAGCGTTGGATTGATGTGGTTGAGAATAAAGGGAAGCGCAGTGGAGCGTATTCATCAGGAATGTATGATACGAATC
CGTTTATCTTGCTGAACTGGCATGATTCTTTAAATCACTTGTACACCTTAGTACACGAACTGGGACATAGTGCGCACAGT
TACTTCACGCGCAACAATCAGCCGTATGTGTATGGGGACTATTCGATCTTCTTAGCTGAGATCGCCAGCACTACAAACGA
GAATCTATTAACAGATTATCTCTTGAAAAAAGCTGACTCGCCTGAAGAGAAAGCTCTCATTCTAAGCCAATACTTAGATG
GATTCAAGGGAACAGTCTTCCGTCAGACACAATTTGCTGAATTCGAGCACAAGATTCACACCGCAGCGCAAGAGAAACAA
CCATTGACTGCTGATTTCTTAAATAAAACCTATGCAGAGATTAATGATAAGTTTTATGGCGATGTTGTAGTTAATGATGA
AGAGATCCAATATGAATGGTCGCGTATTCCGCACTTCTATATGGGTTACTATGTCTATCAATACTCAACTGGTTTCTGTG
CAGCTACGGCGTTAGCGGACAAAATCTTAAATGAAGAAGAAGGTGCGCTAGATGCGTACTTAGGTTACTTGAAATCCGGT
AGTAGCGATTATCCGATCGAAGTGATGAAAAAAGCTGGTCTCGACATGACGAACAAAGATTACTTGCAACGAGCTATGGA
TGTCTTCGAACAACGCTTGAACCAGCTAGAGGAAGTTGTTAAAGAAATTAAATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(117-186)

Peptidase family M3 (Peptidase_M3)

(207-587)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

53.704

98.344

0.528

Multiple sequence alignment