Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   E3T08_RS10260 Genome accession   NZ_CP047815
Coordinates   2102086..2102556 (+) Length   156 a.a.
NCBI ID   WP_000164421.1    Uniprot ID   P65329
Organism   Staphylococcus aureus strain UP_1484     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2097086..2107556
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3T08_RS10240 (E3T08_10240) coaW 2097395..2098198 (+) 804 WP_000862728.1 type II pantothenate kinase -
  E3T08_RS10245 (E3T08_10245) - 2098328..2098999 (-) 672 WP_000120549.1 DUF2750 domain-containing protein -
  E3T08_RS10250 (E3T08_10250) ldmS 2099398..2100591 (-) 1194 WP_000183722.1 L-aspartate--L-methionine ligase LdmS -
  E3T08_RS10255 (E3T08_10255) - 2100591..2101775 (-) 1185 WP_001291498.1 M20 family metallopeptidase -
  E3T08_RS10260 (E3T08_10260) luxS 2102086..2102556 (+) 471 WP_000164421.1 S-ribosylhomocysteine lyase Regulator
  E3T08_RS10265 (E3T08_10265) - 2102708..2103058 (-) 351 WP_001024035.1 membrane protein -
  E3T08_RS10270 (E3T08_10270) - 2103072..2104373 (-) 1302 WP_001242310.1 pyrimidine-nucleoside phosphorylase -
  E3T08_RS10275 (E3T08_10275) deoC 2104654..2105316 (-) 663 WP_001083323.1 deoxyribose-phosphate aldolase -
  E3T08_RS10280 (E3T08_10280) deoD 2105631..2106341 (+) 711 WP_000160304.1 purine-nucleoside phosphorylase -
  E3T08_RS10285 (E3T08_10285) - 2106462..2106905 (-) 444 WP_000070866.1 Dps family protein -
  E3T08_RS10290 (E3T08_10290) - 2107105..2107518 (-) 414 WP_117225759.1 thiol-disulfide oxidoreductase DCC family protein -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 17513.76 Da        Isoelectric Point: 5.4567

>NTDB_id=364026 E3T08_RS10260 WP_000164421.1 2102086..2102556(+) (luxS) [Staphylococcus aureus strain UP_1484]
MTKMNVESFNLDHTKVVAPFIRLAGTMEGLNGDVIHKYDIRFKQPNKEHMDMPGLHSLEHLMAENIRNHSDKVVDLSPMG
CQTGFYVSFINHDNYDDVLNIVEATLNDVLNATEVPACNEVQCGWAASHSLEGAKTIAQAFLDKRNEWHDVFGTGK

Nucleotide


Download         Length: 471 bp        

>NTDB_id=364026 E3T08_RS10260 WP_000164421.1 2102086..2102556(+) (luxS) [Staphylococcus aureus strain UP_1484]
ATGACAAAAATGAATGTTGAAAGTTTCAATTTAGATCATACTAAAGTGGTTGCCCCATTTATTAGATTAGCGGGAACGAT
GGAAGGATTAAACGGAGATGTCATTCACAAATACGACATTCGTTTCAAACAACCAAACAAAGAACATATGGATATGCCCG
GACTACATTCATTAGAACATTTAATGGCTGAAAATATTAGAAATCATAGTGACAAAGTTGTTGATTTAAGTCCTATGGGT
TGCCAAACTGGTTTCTATGTATCATTTATTAATCATGATAATTATGATGATGTATTAAATATTGTTGAAGCAACTTTAAA
TGATGTGCTAAATGCTACTGAAGTGCCTGCTTGTAATGAAGTACAATGTGGCTGGGCAGCAAGTCATTCATTAGAAGGTG
CTAAAACTATCGCTCAAGCATTTCTAGACAAACGAAACGAATGGCATGATGTTTTCGGTACAGGAAAATAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(5-148)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P65329

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

44.681

90.385

0.404