Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   FE336_RS06505 Genome accession   NZ_CP040409
Coordinates   1416368..1418182 (-) Length   604 a.a.
NCBI ID   WP_208955790.1    Uniprot ID   -
Organism   Dolosigranulum pigrum strain KPL3274     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1411368..1423182
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FE336_RS06470 (FE336_06455) - 1411563..1412027 (+) 465 WP_201711508.1 GNAT family N-acetyltransferase -
  FE336_RS06475 (FE336_06460) - 1412020..1412472 (+) 453 WP_208955786.1 GNAT family N-acetyltransferase -
  FE336_RS06480 (FE336_06465) - 1412514..1413413 (-) 900 WP_208955787.1 RluA family pseudouridine synthase -
  FE336_RS06485 (FE336_06470) - 1413403..1414215 (-) 813 WP_004636716.1 NAD kinase -
  FE336_RS06490 (FE336_06475) - 1414217..1414846 (-) 630 WP_004636717.1 GTP pyrophosphokinase family protein -
  FE336_RS06495 (FE336_06480) - 1414939..1415526 (+) 588 WP_208955788.1 CYTH domain-containing protein -
  FE336_RS06500 (FE336_06485) - 1415620..1416246 (+) 627 WP_208955789.1 DsbA family protein -
  FE336_RS06505 (FE336_06490) pepF 1416368..1418182 (-) 1815 WP_208955790.1 oligoendopeptidase F Regulator
  FE336_RS06510 (FE336_06495) - 1418328..1419440 (-) 1113 WP_208955791.1 competence protein CoiA family protein -
  FE336_RS06515 (FE336_06500) - 1419543..1420187 (-) 645 WP_077862708.1 adaptor protein MecA -
  FE336_RS06520 (FE336_06505) - 1420290..1420682 (-) 393 WP_004636723.1 ArsC/Spx/MgsR family protein -
  FE336_RS06525 (FE336_06510) - 1420707..1421726 (-) 1020 WP_004636724.1 lipoate--protein ligase -
  FE336_RS08790 - 1422002..1422136 (-) 135 WP_280115919.1 hypothetical protein -

Sequence

Protein


Download         Length: 604 a.a.        Molecular weight: 69456.28 Da        Isoelectric Point: 4.5104

>NTDB_id=363987 FE336_RS06505 WP_208955790.1 1416368..1418182(-) (pepF) [Dolosigranulum pigrum strain KPL3274]
MSDTKQLPKRHEVEEAKTWDLTTIYENDEAWEQDFEAIDDLKDKFVNFQGTLGDGADNFLAAFETLLDLNRKLSKLFVYS
HLKSDQDTENSTYQTLNDRARLKYAEVAEARSWFTPELLSLSQETIDQYFVEAEGLQPYKHEIETILADRDHVLSAEKEA
LLAGASDILSSGSQTFSMLNNADIEFPTVTNEEGEKVQLSHGLYGELIQSTDRSVRQEAFKKMYEVYKGLNNTFASTLQS
DVKKNNYLARVHHYDSARHQALSNNHIPESVHDTLLEVVNENLPLLHRYMALRKELLGLDELHMYDLYPPITGDDSLEYS
FEEAKEATYKGLSVLGDEYKAILDKAFNERWIDVVENKGKRSGAYSSGMYDTNPFILLNWHDSLNHLYTLVHELGHSAHS
YFTRNNQPYVYGDYSIFLAEIASTTNENLLTDYLLKKADSPEEKALILSQYLDGFKGTVFRQTQFAEFEHKIHTAAQEKQ
PLTADFLNKTYAEINDKFYGDVVVNDEEIQYEWSRIPHFYMGYYVYQYSTGFCAATALADKILNEEEGALDAYLGYLKSG
SSDYPIEVMKKAGLDMTNKDYLQRAMDVFEQRLNQLEEVVKEIK

Nucleotide


Download         Length: 1815 bp        

>NTDB_id=363987 FE336_RS06505 WP_208955790.1 1416368..1418182(-) (pepF) [Dolosigranulum pigrum strain KPL3274]
ATGTCAGACACAAAACAATTACCAAAACGTCATGAAGTAGAAGAAGCAAAAACATGGGATTTAACAACCATTTATGAAAA
TGATGAAGCTTGGGAGCAGGATTTTGAAGCGATTGATGACTTGAAAGATAAATTTGTCAACTTCCAAGGTACTTTGGGTG
ACGGGGCCGATAATTTTCTAGCAGCATTTGAGACATTATTGGATCTGAATCGTAAGTTGAGTAAACTCTTTGTATACTCA
CACTTAAAAAGTGATCAAGATACTGAAAATTCAACGTATCAGACCCTTAATGACCGCGCACGCTTGAAATATGCTGAAGT
TGCAGAAGCACGGTCTTGGTTTACACCAGAATTGCTATCACTCTCACAGGAGACGATTGATCAGTACTTTGTTGAAGCAG
AAGGGCTGCAACCTTACAAACATGAAATTGAAACAATTTTAGCTGATCGAGATCATGTCTTAAGCGCTGAGAAAGAAGCA
TTATTGGCTGGGGCTAGCGATATCTTATCATCTGGAAGCCAAACCTTCTCAATGTTAAATAATGCCGATATTGAATTTCC
AACAGTGACGAATGAAGAAGGCGAGAAAGTCCAATTATCACACGGATTATACGGAGAGTTGATTCAAAGCACGGATCGAT
CAGTACGTCAGGAAGCCTTCAAGAAAATGTATGAAGTCTACAAAGGCTTAAATAATACATTCGCGTCAACGCTTCAGAGC
GATGTGAAGAAAAATAATTATTTAGCACGTGTGCACCATTACGATTCAGCGCGCCATCAAGCGTTATCGAACAATCACAT
TCCAGAGAGCGTGCATGATACCTTGTTAGAAGTGGTGAATGAGAACTTACCACTCTTACACCGTTATATGGCGTTACGTA
AGGAATTACTAGGTCTTGATGAGTTGCATATGTATGATTTATACCCACCGATTACGGGGGATGATAGCTTAGAGTACTCA
TTTGAAGAAGCAAAAGAGGCAACATACAAAGGGTTAAGTGTATTGGGTGATGAGTACAAAGCGATTTTAGATAAAGCATT
CAATGAGCGTTGGATTGATGTGGTTGAGAATAAAGGGAAGCGCAGTGGAGCGTATTCATCAGGAATGTATGATACGAATC
CGTTTATCTTGCTGAACTGGCACGATTCTTTAAATCACTTGTACACCTTAGTACACGAACTGGGACATAGTGCGCACAGT
TACTTCACGCGCAACAATCAGCCGTATGTGTATGGGGACTATTCGATCTTCCTAGCTGAGATCGCCAGCACTACAAACGA
GAATCTATTAACAGATTATCTCTTGAAAAAAGCTGACTCACCTGAAGAGAAAGCTCTCATTCTAAGCCAATACTTAGATG
GATTCAAGGGAACAGTCTTCCGTCAGACACAATTTGCTGAATTCGAGCACAAGATTCACACCGCAGCGCAAGAGAAACAA
CCATTGACTGCTGATTTCTTAAATAAAACCTATGCAGAGATTAATGATAAGTTTTATGGCGATGTTGTAGTTAATGATGA
AGAGATCCAATATGAATGGTCGCGTATTCCGCACTTCTATATGGGTTACTATGTATATCAATACTCAACTGGTTTCTGTG
CAGCCACAGCGTTAGCGGACAAAATCTTAAATGAAGAAGAAGGTGCGCTAGATGCGTACTTAGGTTACTTGAAATCCGGT
AGTAGCGATTATCCGATCGAAGTGATGAAAAAAGCTGGTCTCGACATGACGAACAAAGATTACTTGCAACGAGCAATGGA
TGTCTTCGAACAACGCTTGAACCAGCTAGAGGAAGTTGTTAAAGAAATTAAATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(117-186)

Peptidase family M3 (Peptidase_M3)

(207-587)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

53.704

98.344

0.528

Multiple sequence alignment