Detailed information    

insolico Bioinformatically predicted

Overview

Name   rocC   Type   Regulator
Locus tag   LLO_RS16500 Genome accession   NC_013861
Coordinates   3834782..3835471 (-) Length   229 a.a.
NCBI ID   WP_003634235.1    Uniprot ID   D3HMN1
Organism   Legionella longbeachae NSW150     
Function   rocR chaperone; repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 3829782..3840471
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLO_RS16480 (llo3264) pyk 3830532..3831950 (+) 1419 WP_003634240.1 pyruvate kinase -
  LLO_RS16490 (llo3265) - 3832683..3833351 (+) 669 WP_003634238.1 hypothetical protein -
  LLO_RS16495 (llo3266) - 3833472..3834590 (+) 1119 WP_003634237.1 hypothetical protein -
  LLO_RS16500 (llo3267) rocC 3834782..3835471 (-) 690 WP_003634235.1 ProQ/FinO family protein Regulator
  LLO_RS16505 (llo3268) - 3835763..3835978 (+) 216 WP_003634232.1 hypothetical protein -
  LLO_RS16510 (llo3269) dapB 3835997..3836728 (+) 732 WP_003634231.1 4-hydroxy-tetrahydrodipicolinate reductase -
  LLO_RS16515 (llo3270) - 3836767..3839244 (-) 2478 WP_003634229.1 hypothetical protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25675.36 Da        Isoelectric Point: 10.4497

>NTDB_id=36397 LLO_RS16500 WP_003634235.1 3834782..3835471(-) (rocC) [Legionella longbeachae NSW150]
MRKQELHPRTAVINKAQKNKSKKARTDALLWLAANFPAAFDNSLRIRPLKIGIMDDILLHAEKAAEVGISKSKLREAVVL
FTRRLDYLACLKLREMRIDLQGNDVGEVSSEEAEYAAAKIKKRVEKSARNARKALADKTANPSNPNPQGMSYHSKIMNQS
SNTTDDNFPVYPTRSTYNALNATTQPVRTTAVVVKHKSAKQYDPDAVARLKEKLGLSRNSEEKKETVEE

Nucleotide


Download         Length: 690 bp        

>NTDB_id=36397 LLO_RS16500 WP_003634235.1 3834782..3835471(-) (rocC) [Legionella longbeachae NSW150]
ATGAGAAAACAGGAGCTGCACCCACGCACCGCTGTTATTAATAAAGCTCAAAAAAATAAGTCTAAAAAAGCACGGACAGA
TGCTTTATTATGGCTTGCTGCAAATTTTCCTGCAGCATTTGATAATTCACTACGAATTCGCCCATTAAAAATTGGTATTA
TGGATGATATTTTACTTCATGCAGAAAAAGCTGCGGAAGTTGGTATTTCCAAAAGCAAATTGAGAGAAGCAGTGGTGTTA
TTTACGCGCCGTCTAGATTATTTGGCCTGTCTTAAGCTTCGAGAAATGCGAATTGATTTGCAAGGTAATGACGTTGGTGA
AGTGAGTTCAGAGGAAGCTGAATATGCGGCTGCCAAGATTAAAAAGCGTGTTGAGAAAAGTGCTCGTAACGCGCGTAAAG
CGCTTGCAGACAAAACAGCTAATCCTTCTAATCCAAATCCTCAAGGCATGAGCTACCACTCAAAAATAATGAATCAATCA
TCAAACACAACGGATGATAATTTTCCTGTTTATCCCACACGATCTACCTATAATGCCCTAAATGCAACGACACAACCGGT
TAGAACTACTGCTGTAGTGGTAAAGCATAAGTCAGCAAAACAATATGATCCTGATGCTGTAGCTCGTTTGAAAGAGAAAT
TGGGATTGTCCCGAAATTCCGAAGAAAAAAAAGAAACTGTTGAAGAGTAA

Domains

Predicted by InterproScan.

ProQ/FINO family (ProQ)

(27-132)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB D3HMN1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rocC Legionella pneumophila str. Paris

70

100

0.703

Multiple sequence alignment