Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   FE337_RS06900 Genome accession   NZ_CP040408
Coordinates   1435667..1437481 (-) Length   604 a.a.
NCBI ID   WP_208966290.1    Uniprot ID   -
Organism   Dolosigranulum pigrum strain KPL3911     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1430667..1442481
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FE337_RS06865 (FE337_06840) - 1430862..1431326 (+) 465 WP_201711508.1 GNAT family N-acetyltransferase -
  FE337_RS06870 (FE337_06845) - 1431319..1431771 (+) 453 WP_208966288.1 GNAT family N-acetyltransferase -
  FE337_RS06875 (FE337_06850) - 1431813..1432712 (-) 900 WP_208966289.1 RluA family pseudouridine synthase -
  FE337_RS06880 (FE337_06855) - 1432702..1433514 (-) 813 WP_004636716.1 NAD kinase -
  FE337_RS06885 (FE337_06860) - 1433516..1434145 (-) 630 WP_004636717.1 GTP pyrophosphokinase family protein -
  FE337_RS06890 (FE337_06865) - 1434238..1434825 (+) 588 WP_111950054.1 CYTH domain-containing protein -
  FE337_RS06895 (FE337_06870) - 1434919..1435545 (+) 627 WP_004636719.1 DsbA family protein -
  FE337_RS06900 (FE337_06875) pepF 1435667..1437481 (-) 1815 WP_208966290.1 oligoendopeptidase F Regulator
  FE337_RS06905 (FE337_06880) - 1437627..1438739 (-) 1113 WP_208966291.1 competence protein CoiA family protein -
  FE337_RS06910 (FE337_06885) - 1438842..1439486 (-) 645 WP_112786968.1 adaptor protein MecA -
  FE337_RS06915 (FE337_06890) - 1439589..1439981 (-) 393 WP_004636723.1 ArsC/Spx/MgsR family protein -
  FE337_RS06920 (FE337_06895) - 1440006..1441025 (-) 1020 WP_004636724.1 lipoate--protein ligase -
  FE337_RS06925 - 1441270..1441434 (-) 165 WP_208966292.1 hypothetical protein -

Sequence

Protein


Download         Length: 604 a.a.        Molecular weight: 69401.20 Da        Isoelectric Point: 4.5104

>NTDB_id=363965 FE337_RS06900 WP_208966290.1 1435667..1437481(-) (pepF) [Dolosigranulum pigrum strain KPL3911]
MSDTKQLPKRHEVEEAKTWDLTTIYESDEAWEQDFEAIDDLKDKFVNFQGTLGDGADNFLAAFETLLDLNRKLSKLFVYS
HLKSDQDTENSTYQTLNDRARLKYAEVAEARSWFTPELLSLSQETIDQYFAEAEGLQPYKHEIETILADRDHVLSAEKEA
LLAGASDILSSGSQTFSMLNNADIEFPTVTNEEGEKVQLSHGLYGELIQSTDRSVRQEAFKKMYEVYKGLNNTFASTLQS
DVKKNNYLARVHHYDSARHQALSNNHIPESVHDTLLEVVNENLPLLHRYMALRKELLGLDELHMYDLYPPITGDDSLEYS
FEEAKEATYKGLSVLGDEYKAILDKAFNERWIDVVENKGKRSGAYSSGMYDTNPFILLNWHDSLNHLYTLVHELGHSAHS
YFTRNNQPYVYGDYSIFLAEIASTTNENLLTDYLLKKADSPEEKALILSQYLDGFKGTVFRQTQFAEFEHKIHTAAQEKQ
PLTADFLNKTYAEINDKFYGDVVVNDEEIQYEWSRIPHFYMGYYVYQYSTGFCAATALADKILNEEEGALDAYLGYLKSG
SSDYPIEVMKKAGLDMTNKDYLQRAMDVFEQRLNQLEEVVKEIK

Nucleotide


Download         Length: 1815 bp        

>NTDB_id=363965 FE337_RS06900 WP_208966290.1 1435667..1437481(-) (pepF) [Dolosigranulum pigrum strain KPL3911]
ATGTCAGACACAAAACAATTACCAAAACGTCATGAAGTAGAAGAAGCAAAAACATGGGACTTAACAACTATTTATGAAAG
TGATGAAGCTTGGGAGCAGGATTTTGAAGCGATTGATGACTTGAAAGATAAGTTTGTCAACTTCCAAGGTACTTTGGGTG
ACGGGGCCGATAATTTTCTAGCAGCATTTGAGACATTATTGGATCTAAATCGTAAGTTGAGTAAACTCTTTGTATACTCT
CATTTGAAAAGTGATCAAGATACTGAAAATTCAACGTATCAGACCCTTAATGACCGCGCACGCTTGAAATATGCTGAAGT
TGCAGAAGCAAGGTCTTGGTTTACACCAGAATTGCTATCACTCTCACAGGAGACGATTGATCAGTACTTTGCTGAAGCAG
AAGGGCTGCAACCTTACAAACATGAGATTGAAACTATTTTAGCTGATCGAGATCATGTCTTAAGCGCTGAGAAAGAAGCA
TTATTGGCTGGGGCTAGCGATATTTTATCATCTGGAAGCCAAACCTTCTCGATGTTAAATAATGCCGATATTGAATTTCC
AACAGTGACGAATGAAGAAGGCGAGAAAGTCCAATTATCACACGGTTTATACGGAGAGTTGATTCAGAGCACGGATCGAT
CAGTACGCCAGGAAGCCTTCAAGAAAATGTATGAAGTTTACAAAGGCTTAAATAATACATTCGCGTCAACGCTTCAGAGT
GATGTGAAGAAAAATAATTATTTAGCACGTGTGCACCATTACGATTCAGCGCGCCATCAAGCGTTATCGAACAATCACAT
TCCAGAGAGCGTGCATGATACCTTGTTAGAAGTGGTGAATGAGAACTTACCACTCTTACACCGTTATATGGCATTACGTA
AGGAATTACTGGGTCTTGATGAGTTGCATATGTATGATTTATACCCACCGATTACGGGGGATGATAGCCTAGAGTACTCA
TTTGAAGAAGCAAAAGAGGCAACATATAAAGGGTTAAGTGTATTGGGTGATGAGTACAAAGCGATTTTAGATAAAGCATT
CAATGAGCGTTGGATTGATGTGGTTGAGAATAAAGGGAAGCGCAGTGGAGCGTATTCATCAGGAATGTATGATACAAATC
CGTTTATCTTGCTGAACTGGCATGATTCTTTAAATCACTTGTACACCTTAGTGCATGAATTAGGCCATAGTGCGCACAGT
TACTTCACGCGCAACAATCAGCCGTATGTGTATGGGGACTATTCGATCTTCTTAGCTGAGATCGCCAGCACTACAAACGA
GAATCTATTAACGGATTATCTCTTGAAAAAAGCTGACTCACCTGAAGAGAAAGCTCTCATTCTAAGCCAATACTTAGATG
GATTCAAGGGAACAGTCTTCCGTCAGACACAATTTGCTGAATTCGAGCACAAGATTCACACCGCAGCGCAAGAAAAACAA
CCATTGACTGCTGATTTCTTAAATAAAACCTATGCAGAGATTAATGATAAGTTTTATGGCGATGTTGTAGTTAATGATGA
AGAGATCCAATATGAATGGTCGCGTATTCCGCACTTCTATATGGGTTACTATGTATATCAATACTCAACTGGTTTCTGTG
CAGCTACGGCGTTAGCGGACAAAATCTTAAATGAAGAAGAAGGTGCGCTAGATGCGTACTTAGGTTACTTGAAATCCGGT
AGTAGCGATTATCCAATCGAAGTGATGAAAAAAGCTGGTCTCGACATGACGAACAAAGATTACTTGCAACGAGCGATGGA
TGTCTTCGAACAACGCTTGAACCAGCTAGAGGAAGTTGTTAAAGAAATTAAATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(207-587)

Oligopeptidase F (Peptidase_M3_N)

(117-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

53.704

98.344

0.528

Multiple sequence alignment