Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   E6C60_RS18630 Genome accession   NZ_CP040396
Coordinates   3967729..3969096 (-) Length   455 a.a.
NCBI ID   WP_138227174.1    Uniprot ID   -
Organism   Paenibacillus algicola strain HB172198     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3962729..3974096
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E6C60_RS18605 (E6C60_3759) ispD 3963179..3963877 (-) 699 WP_138227169.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  E6C60_RS18610 (E6C60_3760) - 3963974..3965062 (-) 1089 WP_138227170.1 PIN/TRAM domain-containing protein -
  E6C60_RS18615 (E6C60_3761) - 3965333..3965728 (+) 396 WP_138227171.1 DUF1573 domain-containing protein -
  E6C60_RS18620 (E6C60_3762) pssA 3965859..3966587 (-) 729 WP_138227172.1 CDP-diacylglycerol--serine O-phosphatidyltransferase -
  E6C60_RS18625 (E6C60_3763) disA 3966639..3967715 (-) 1077 WP_138227173.1 DNA integrity scanning diadenylate cyclase DisA -
  E6C60_RS18630 (E6C60_3764) radA 3967729..3969096 (-) 1368 WP_138227174.1 DNA repair protein RadA Machinery gene
  E6C60_RS18635 (E6C60_3765) clpC 3969397..3971844 (-) 2448 WP_138227175.1 ATP-dependent protease ATP-binding subunit ClpC -
  E6C60_RS18640 (E6C60_3766) - 3971914..3972993 (-) 1080 WP_138227176.1 protein arginine kinase -
  E6C60_RS18645 (E6C60_3767) - 3973049..3973570 (-) 522 WP_138227891.1 UvrB/UvrC motif-containing protein -
  E6C60_RS18650 (E6C60_3768) - 3973605..3974066 (-) 462 WP_138227177.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 49615.25 Da        Isoelectric Point: 7.4115

>NTDB_id=363916 E6C60_RS18630 WP_138227174.1 3967729..3969096(-) (radA) [Paenibacillus algicola strain HB172198]
MAKSKTKFYCTDCGYESPKWYGKCPGCQAWNSMVEETETVIKTQGMNSPVFHSKEKPVSILNVESGKEPRIETGIIELNR
VLGGGLVPGSLVLVGGDPGIGKSTLLLQTSNQLANRGLRVLYISGEESVRQTKLRADRLGALSPELFVLCETNLESVEEA
IESVQPQFVVIDSIQTVYQPDISSAPGSVSQVRECTARFMRIAKVKGIATVLVGHVTKEGAIAGPRMLEHMVDCVLYFEG
ERHHTYRLLRAVKNRFGSTNEMGIFEMGEEGLREVGNPSELFLSERPLGVAGSTVVASMEGTRPVLVELQALISSTHFPS
PRRMGTGVDHHRMNLIIAVLEKRMGMFLQNQDAYLNVAGGVKLDEPAVDLAIAVSIASSFRDVPTKPYDVIFGEVGLTGE
VRAVSRAEQRVKEAQKLGFKRVILPEKSLKGWKHPKGIEIIGVNTVADALAVALN

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=363916 E6C60_RS18630 WP_138227174.1 3967729..3969096(-) (radA) [Paenibacillus algicola strain HB172198]
ATGGCTAAATCCAAAACCAAGTTTTATTGTACCGACTGCGGCTATGAATCGCCGAAATGGTACGGCAAATGCCCAGGCTG
TCAGGCCTGGAACTCCATGGTGGAAGAAACCGAGACGGTAATCAAGACACAGGGCATGAATTCGCCCGTATTTCATAGTA
AAGAGAAGCCCGTATCCATCCTGAATGTGGAGAGCGGCAAGGAGCCCCGGATCGAGACCGGCATTATAGAGCTGAACAGA
GTACTCGGCGGCGGACTCGTCCCGGGTTCACTTGTGCTTGTCGGCGGTGATCCGGGCATCGGCAAATCAACCCTGCTTCT
CCAAACCTCGAATCAGCTGGCTAATCGCGGGCTGCGGGTGCTGTATATCTCGGGAGAGGAATCGGTTCGCCAGACCAAGC
TTCGTGCTGACCGCCTAGGGGCCTTATCCCCGGAGCTGTTTGTGCTTTGCGAGACGAATCTGGAGAGTGTGGAGGAAGCG
ATTGAAAGCGTGCAGCCGCAGTTTGTGGTCATTGACTCCATTCAGACGGTGTATCAGCCGGATATTTCAAGTGCTCCGGG
AAGCGTATCGCAGGTGCGGGAATGTACCGCCCGGTTTATGCGGATTGCGAAGGTCAAGGGCATCGCTACAGTGCTCGTGG
GCCACGTGACGAAGGAAGGAGCCATCGCGGGACCGCGGATGCTGGAGCATATGGTGGATTGCGTGCTTTATTTTGAAGGG
GAACGCCATCATACGTACCGGCTGCTGCGCGCCGTGAAGAACCGCTTCGGCTCCACGAACGAGATGGGGATTTTTGAAAT
GGGTGAGGAGGGGCTGCGGGAGGTTGGCAATCCATCCGAGCTGTTTCTCTCCGAGCGTCCGCTGGGGGTAGCCGGCTCTA
CGGTGGTAGCGAGCATGGAAGGCACACGGCCCGTACTTGTGGAGCTGCAGGCTTTGATCTCATCGACTCATTTTCCGTCT
CCAAGGCGGATGGGCACCGGGGTAGATCATCACCGGATGAATCTCATTATTGCGGTGCTGGAGAAAAGGATGGGCATGTT
CCTGCAGAATCAGGACGCTTACCTTAATGTAGCCGGGGGCGTGAAGCTGGATGAGCCGGCTGTGGATCTTGCGATCGCAG
TCAGCATTGCATCCAGCTTCCGCGATGTACCGACGAAGCCGTATGACGTCATCTTCGGAGAAGTCGGCCTGACCGGTGAA
GTGCGGGCAGTGTCCCGTGCGGAGCAGCGGGTGAAGGAAGCGCAGAAGCTGGGCTTTAAACGGGTTATCCTGCCCGAGAA
GAGCCTGAAGGGATGGAAGCATCCCAAGGGCATAGAAATTATTGGAGTTAATACGGTAGCAGATGCGTTAGCGGTTGCGT
TAAATTAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(77-220)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(344-427)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

68.845

100

0.695
  radA Streptococcus pneumoniae Rx1

59.111

98.901

0.585
  radA Streptococcus pneumoniae D39

59.111

98.901

0.585
  radA Streptococcus pneumoniae R6

59.111

98.901

0.585
  radA Streptococcus pneumoniae TIGR4

59.111

98.901

0.585
  radA Streptococcus mitis NCTC 12261

59.111

98.901

0.585
  radA Streptococcus mitis SK321

58.889

98.901

0.582

Multiple sequence alignment