Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilZ   Type   Machinery gene
Locus tag   LLO_RS07625 Genome accession   NC_013861
Coordinates   1763217..1763552 (+) Length   111 a.a.
NCBI ID   WP_012979073.1    Uniprot ID   -
Organism   Legionella longbeachae NSW150     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1758217..1768552
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLO_RS07600 (llo1484) acpP 1758871..1759119 (+) 249 WP_003631752.1 acyl carrier protein -
  LLO_RS07605 (llo1485) fabF 1759374..1760612 (+) 1239 WP_012979070.1 beta-ketoacyl-ACP synthase II -
  LLO_RS07610 (llo1486) mltG 1760613..1761611 (+) 999 WP_012979071.1 endolytic transglycosylase MltG -
  LLO_RS07615 (llo1487) tmk 1761613..1762251 (+) 639 WP_003631741.1 dTMP kinase -
  LLO_RS07620 (llo1488) - 1762248..1763162 (+) 915 WP_012979072.1 DNA polymerase III subunit delta' C-terminal domain-containing protein -
  LLO_RS07625 (llo1489) pilZ 1763217..1763552 (+) 336 WP_012979073.1 PilZ domain-containing protein Machinery gene
  LLO_RS07630 (llo1490) - 1763630..1764415 (+) 786 WP_003631738.1 TatD family hydrolase -
  LLO_RS07635 (llo1491) - 1764415..1765512 (+) 1098 WP_012979074.1 anhydro-N-acetylmuramic acid kinase -
  LLO_RS07640 (llo1492) - 1766270..1767568 (+) 1299 WP_003631736.1 MFS transporter -

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12245.02 Da        Isoelectric Point: 6.2110

>NTDB_id=36386 LLO_RS07625 WP_012979073.1 1763217..1763552(+) (pilZ) [Legionella longbeachae NSW150]
MDKHQINCIFPNESALYAAYMPFVKHGGIFIRTNHKFEFGAIVSLSIKLMEEDESYEVGGKVVWITPQGAQGNKIPGIGV
QFVGENSSNLCNKIETYLAGMLKSSQTTDTI

Nucleotide


Download         Length: 336 bp        

>NTDB_id=36386 LLO_RS07625 WP_012979073.1 1763217..1763552(+) (pilZ) [Legionella longbeachae NSW150]
ATGGATAAACATCAGATCAACTGTATATTTCCTAATGAATCAGCGCTGTATGCAGCTTATATGCCCTTTGTTAAACATGG
TGGAATATTTATTCGCACGAACCACAAGTTTGAGTTTGGTGCAATAGTGAGCTTATCTATAAAACTAATGGAAGAGGATG
AGTCATACGAAGTCGGTGGAAAAGTGGTATGGATTACACCTCAAGGTGCTCAAGGTAATAAGATTCCTGGAATAGGGGTA
CAGTTTGTAGGAGAAAATAGCAGTAATTTGTGCAATAAAATAGAGACCTATTTAGCAGGCATGTTAAAATCATCCCAGAC
AACAGATACAATTTAG

Domains

Predicted by InterproScan.

PilZ domain (PilZ)

(12-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilZ Legionella pneumophila str. Paris

69.811

95.495

0.667
  pilZ Legionella pneumophila strain ERS1305867

69.811

95.495

0.667

Multiple sequence alignment