Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   LLO_RS04495 Genome accession   NC_013861
Coordinates   1006283..1006846 (+) Length   187 a.a.
NCBI ID   WP_003632473.1    Uniprot ID   D3HQQ0
Organism   Legionella longbeachae NSW150     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1001283..1011846
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLO_RS04485 (llo0873) - 1003547..1004977 (-) 1431 WP_003632475.1 hypothetical protein -
  LLO_RS04490 (llo0874) pilM 1005214..1006278 (+) 1065 WP_003632474.1 type IV pilus assembly protein PilM Machinery gene
  LLO_RS04495 (llo0875) pilN 1006283..1006846 (+) 564 WP_003632473.1 PilN domain-containing protein Machinery gene
  LLO_RS04500 (llo0876) pilO 1006843..1007442 (+) 600 WP_012978910.1 type 4a pilus biogenesis protein PilO Machinery gene
  LLO_RS04505 (llo0877) pilP 1007439..1007945 (+) 507 WP_003632471.1 pilus assembly protein PilP Machinery gene
  LLO_RS04510 (llo0878) pilQ 1007954..1010059 (+) 2106 WP_012978911.1 type IV pilus secretin PilQ Machinery gene
  LLO_RS04515 (llo0879) aroK 1010395..1010922 (+) 528 WP_003632469.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 187 a.a.        Molecular weight: 21920.72 Da        Isoelectric Point: 7.3178

>NTDB_id=36372 LLO_RS04495 WP_003632473.1 1006283..1006846(+) (pilN) [Legionella longbeachae NSW150]
MTQINLLPWREQKREQEKKLFMVLFFIVIALSIFIVFLINTYASDLVSNQLVRNQMLQDEIAAMNSQLIEIKNLKKTREL
FISRMFIVQHLQSTRTLMVHLFDELINVMPSGIYLTKVEGKNDILSVTGYTESNTYVSILMKNIEINEWIHSPVLSEIKK
EDRQEPANNEFKLNFVLAPQFQLGIIR

Nucleotide


Download         Length: 564 bp        

>NTDB_id=36372 LLO_RS04495 WP_003632473.1 1006283..1006846(+) (pilN) [Legionella longbeachae NSW150]
ATGACACAAATTAATCTTCTTCCTTGGCGAGAACAAAAGCGGGAGCAAGAAAAAAAGCTGTTCATGGTGTTATTTTTCAT
AGTTATAGCGCTTTCAATATTTATTGTGTTTTTAATTAATACTTATGCCTCTGATTTAGTAAGTAATCAACTTGTTCGAA
ATCAGATGCTGCAAGATGAAATAGCGGCTATGAATAGCCAGTTAATTGAAATTAAAAATTTGAAAAAAACTCGAGAATTA
TTCATTTCCAGAATGTTTATAGTTCAGCATTTGCAATCAACCAGAACCTTGATGGTTCATTTATTTGATGAATTAATTAA
TGTAATGCCTTCCGGTATTTATTTAACAAAGGTAGAAGGAAAAAATGATATTCTTTCAGTCACTGGTTATACTGAATCAA
ATACCTATGTTTCAATTTTAATGAAAAATATAGAAATTAATGAATGGATCCATTCTCCTGTTCTGAGCGAAATTAAGAAG
GAAGACCGTCAGGAACCTGCTAATAATGAATTTAAGTTAAATTTTGTTCTTGCCCCTCAATTTCAGTTGGGGATTATACG
ATGA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-175)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB D3HQQ0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Legionella pneumophila strain ERS1305867

62.295

97.861

0.61

Multiple sequence alignment