Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   FED53_RS17175 Genome accession   NZ_CP040367
Coordinates   3223736..3225556 (-) Length   606 a.a.
NCBI ID   WP_078990186.1    Uniprot ID   A0A8I1MEV7
Organism   Priestia flexa isolate 1-2-1     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 3218736..3230556
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FED53_RS17145 (FED53_17145) - 3219160..3219801 (-) 642 WP_025908133.1 GTP pyrophosphokinase -
  FED53_RS17150 (FED53_17150) - 3219821..3220207 (-) 387 WP_025908134.1 hypothetical protein -
  FED53_RS17155 (FED53_17155) - 3220511..3221101 (+) 591 WP_076513368.1 CYTH domain-containing protein -
  FED53_RS17160 (FED53_17160) - 3221106..3221750 (+) 645 WP_025908136.1 lytic transglycosylase domain-containing protein -
  FED53_RS17165 (FED53_17165) - 3221971..3222381 (+) 411 WP_061785625.1 globin -
  FED53_RS17170 (FED53_17170) - 3222378..3223262 (+) 885 WP_061785626.1 ClpXP adapter SpxH family protein -
  FED53_RS21015 - 3223519..3223695 (+) 177 WP_090752849.1 hypothetical protein -
  FED53_RS17175 (FED53_17175) pepF 3223736..3225556 (-) 1821 WP_078990186.1 oligoendopeptidase F Regulator
  FED53_RS17180 (FED53_17180) - 3225707..3226894 (-) 1188 WP_061785628.1 competence protein CoiA -
  FED53_RS17185 (FED53_17185) cls 3227289..3228806 (-) 1518 WP_025908143.1 cardiolipin synthase -
  FED53_RS17190 (FED53_17190) mecA 3228887..3229570 (-) 684 WP_061785448.1 adaptor protein MecA -
  FED53_RS17195 (FED53_17195) - 3229892..3230554 (+) 663 WP_138117356.1 TerC family protein -

Sequence

Protein


Download         Length: 606 a.a.        Molecular weight: 70113.76 Da        Isoelectric Point: 4.6532

>NTDB_id=363708 FED53_RS17175 WP_078990186.1 3223736..3225556(-) (pepF) [Priestia flexa isolate 1-2-1]
MSEQSTVKKLPNRSEIKVEDTWRLEDIFETDEAWEKEFQAVKALVPEMEQYRGKLGESADMLFKALQQQDELTMRVSKLY
TYAHMRYDQDTTNSFYQGLNDRIKMLYTEIASALSYVTPELLAVDEETLKQYLKDSKDLQLYAHALDEVNRERPHILSES
EEAILAQASEALGASSNTFGMLNNADLEFPSIKDENGEEVEITHGRYIRFLESSDRRVREEAFKAVYDTYGKFKNTFAST
LSGTVKKDNFSAKVRNYESARHAALSANNIPEEVYDNLVATVNEYLPLLQRYIDLRKKVLGVDELHMYDLYTPLVQDVKM
EIPYSEAKDYLLKGLAPLGEEYISILKEGFENRWVDVHENKGKRSGAYSSGTYGTNPYILMNWQDNVNNLFTLAHEFGHS
VHSYYTRKEQPYPYGDYSIFVAEVASTCNEALLNDYLLKTIDDEKKRLYLLNHYLEGFRGTVFRQTMFAEFEHEIHVRAQ
NGEPLTPELLTKLYYDLNKKYFGDNLVIDEEIGLEWARIPHFYYNYYVYQYATGFSAAAALSKQILEEGDAAVERYLGFL
KAGSSDYPIEVLKRAGVDMTTAEPIKEALEVFKEKLEEMERLLEKN

Nucleotide


Download         Length: 1821 bp        

>NTDB_id=363708 FED53_RS17175 WP_078990186.1 3223736..3225556(-) (pepF) [Priestia flexa isolate 1-2-1]
ATGAGTGAACAATCCACGGTGAAAAAGCTGCCAAATCGCAGTGAAATTAAAGTAGAAGATACATGGAGATTAGAAGATAT
TTTTGAAACAGATGAAGCGTGGGAGAAAGAATTTCAAGCTGTTAAAGCCTTAGTTCCGGAAATGGAACAATATCGCGGCA
AGCTTGGAGAATCAGCAGATATGCTTTTTAAAGCACTTCAGCAGCAAGATGAACTAACAATGCGGGTCAGCAAGCTTTAT
ACATATGCACATATGAGGTATGACCAAGATACAACGAACTCATTCTATCAAGGATTAAATGATCGAATTAAAATGTTGTA
TACAGAAATTGCGAGTGCGTTATCTTACGTCACGCCTGAACTATTAGCAGTAGATGAGGAAACGCTAAAACAATATTTAA
AAGATAGCAAGGATTTACAGCTATATGCACATGCGCTGGATGAAGTGAATCGTGAGCGTCCTCATATCCTTTCTGAGAGT
GAAGAAGCTATTCTAGCACAGGCATCTGAAGCGCTAGGAGCATCAAGTAATACGTTCGGTATGCTGAATAATGCTGATTT
AGAGTTTCCATCTATTAAAGATGAAAACGGGGAAGAAGTGGAGATTACCCACGGTCGTTATATTCGGTTTTTAGAAAGCA
GTGATCGACGCGTTAGAGAAGAAGCGTTTAAAGCCGTCTATGATACGTATGGAAAGTTTAAAAATACATTTGCGAGTACT
CTTAGCGGAACGGTTAAAAAAGATAACTTTAGCGCTAAGGTCCGTAACTACGAATCAGCTCGCCATGCAGCTCTAAGCGC
AAACAATATTCCAGAAGAGGTATATGATAATTTAGTTGCAACGGTAAACGAATATCTGCCTCTATTACAGCGCTATATTG
ACCTACGAAAGAAAGTGTTAGGTGTTGATGAGCTTCACATGTATGATCTATATACACCGCTTGTGCAAGACGTCAAAATG
GAAATACCATATAGCGAAGCAAAAGATTATTTATTAAAAGGTTTGGCGCCGCTTGGAGAAGAGTACATTTCCATTTTAAA
AGAAGGATTTGAAAATCGCTGGGTTGATGTGCACGAAAACAAAGGAAAGCGAAGCGGTGCTTATTCTTCTGGAACATATG
GAACAAATCCATATATCTTAATGAACTGGCAGGACAATGTGAACAATCTTTTCACATTAGCTCATGAGTTTGGTCACTCA
GTGCACAGTTACTATACGCGTAAAGAACAGCCTTACCCATACGGTGATTATTCAATCTTTGTCGCTGAAGTCGCATCTAC
GTGTAACGAAGCTCTATTAAATGATTATTTATTGAAAACAATCGATGATGAAAAGAAACGATTATACTTATTAAATCATT
ATTTAGAAGGCTTCCGCGGTACCGTGTTCCGTCAAACGATGTTTGCTGAATTTGAGCATGAAATTCACGTTCGGGCTCAA
AATGGTGAACCGCTAACACCAGAGCTGCTAACAAAGTTATACTATGATTTAAATAAAAAGTACTTTGGTGATAATTTAGT
CATTGATGAAGAGATTGGCTTAGAGTGGGCAAGAATTCCACATTTCTACTATAATTATTATGTGTATCAATACGCAACAG
GCTTCAGCGCAGCTGCAGCGCTAAGTAAGCAAATTCTTGAAGAAGGAGACGCGGCTGTTGAGCGTTACCTTGGCTTCTTA
AAAGCTGGAAGCTCTGATTATCCAATCGAAGTGCTAAAACGCGCAGGAGTGGATATGACAACTGCTGAACCAATCAAAGA
AGCATTAGAAGTGTTTAAAGAAAAGCTTGAAGAGATGGAACGTTTGTTAGAGAAAAACTAA

Domains

Predicted by InterProScan.

Oligopeptidase F (Peptidase_M3_N)

(120-189)

Peptidase family M3 (Peptidase_M3)

(211-590)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

49.327

98.02

0.484

Multiple sequence alignment