Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   FED53_RS04955 Genome accession   NZ_CP040367
Coordinates   835227..836945 (+) Length   572 a.a.
NCBI ID   WP_025911489.1    Uniprot ID   A0A1N6N653
Organism   Priestia flexa isolate 1-2-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 830227..841945
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FED53_RS04930 (FED53_04930) - 830403..830636 (+) 234 WP_025911499.1 exodeoxyribonuclease VII small subunit -
  FED53_RS04935 (FED53_04935) - 830639..831532 (+) 894 WP_138116639.1 polyprenyl synthetase family protein -
  FED53_RS04940 (FED53_04940) dxs 831849..833747 (+) 1899 WP_025911495.1 1-deoxy-D-xylulose-5-phosphate synthase -
  FED53_RS04945 (FED53_04945) - 833744..834574 (+) 831 WP_025911493.1 TlyA family RNA methyltransferase -
  FED53_RS04950 (FED53_04950) ahrC 834761..835210 (+) 450 WP_025911491.1 transcriptional regulator AhrC/ArgR -
  FED53_RS04955 (FED53_04955) recN 835227..836945 (+) 1719 WP_025911489.1 DNA repair protein RecN Machinery gene
  FED53_RS04960 (FED53_04960) spoIVB 837132..838409 (+) 1278 WP_138116640.1 SpoIVB peptidase -
  FED53_RS04965 (FED53_04965) spo0A 838635..839426 (+) 792 WP_025911485.1 sporulation transcription factor Spo0A -
  FED53_RS04970 (FED53_04970) - 839825..840073 (+) 249 WP_224839988.1 DUF2798 domain-containing protein -
  FED53_RS04975 (FED53_04975) - 840107..841678 (-) 1572 WP_138116641.1 L-lactate permease -

Sequence

Protein


Download         Length: 572 a.a.        Molecular weight: 64299.83 Da        Isoelectric Point: 4.6409

>NTDB_id=363689 FED53_RS04955 WP_025911489.1 835227..836945(+) (recN) [Priestia flexa isolate 1-2-1]
MLAELSIKNFAIIDELSVSFEKGLTVLTGETGAGKSIIIDAIHLLVGGRGSSEFVRHGTNRAEIEGLFLIEDEHPCYEKA
KQVGVEVEDGMVVLRRDITMNGKSICRINGKLVTLGILREVGQTLMDIHGQHEHQDLMNQDRHLILLDQYGGQKVEEALS
EYREVFATYTTLKKQLEQLTENEQQMAHRLDLIQFQLDEIKAADLQPNEDEQLMDERLKISNFEKIYTSLTDAYNALHGE
QRGLDWLGVAMNHAEEISNLEDTYGEISEVISSSFYQIEDVSYRIRQQLDLLEYDPKRLNFIESRLNEISHLKRKYGQSV
DEILEYAAQIEDEIDRIENRDTHVEKIKQKLSSVAEDLLVEAKNVSEVRKQLAAELTDSIHQELQELYMAKTIFNIVFEK
LPPNQADSELSGGSVKFTKDGIDSVEFYISTNPGEPLKPLAKVASGGELSRIMLALKSIFSKHQGVTSIIFDEVDTGVSG
RVAQSIGEKIHAISVDSQVLCISHLPQVAAMADTHLFISKQIKDDRTTTSVLPLNEEEKTKEIARMIAGAEITDLTQQHA
QELLGLAAKIKQ

Nucleotide


Download         Length: 1719 bp        

>NTDB_id=363689 FED53_RS04955 WP_025911489.1 835227..836945(+) (recN) [Priestia flexa isolate 1-2-1]
TTGTTAGCAGAACTATCAATCAAAAACTTTGCCATCATTGATGAGCTTTCAGTATCGTTTGAAAAAGGCTTAACAGTTTT
AACAGGTGAAACAGGAGCTGGTAAGTCAATTATTATTGATGCCATTCATCTGCTTGTTGGTGGACGCGGTTCATCCGAGT
TTGTAAGGCATGGAACAAATCGAGCGGAAATCGAAGGGTTATTTCTAATTGAAGACGAGCACCCTTGCTATGAAAAAGCG
AAGCAGGTGGGAGTTGAAGTTGAAGATGGCATGGTGGTACTCAGACGAGATATTACCATGAATGGTAAGAGTATTTGTCG
TATTAATGGAAAGCTAGTCACGCTTGGCATTTTACGTGAAGTGGGTCAAACACTGATGGATATTCATGGTCAGCATGAGC
ACCAGGACTTAATGAACCAAGATCGACATCTAATTCTTCTTGACCAGTATGGAGGTCAGAAGGTTGAAGAAGCACTATCA
GAATATCGAGAAGTGTTTGCTACATATACAACGTTAAAGAAACAATTAGAACAATTAACAGAAAACGAACAGCAAATGGC
CCACCGCTTAGATTTAATTCAATTTCAGCTTGATGAAATAAAAGCAGCCGACCTTCAACCAAATGAAGATGAGCAACTGA
TGGATGAGCGCCTTAAAATTTCTAACTTTGAAAAGATTTATACGTCCTTAACGGATGCATATAACGCTCTTCATGGTGAG
CAAAGAGGACTAGATTGGCTAGGTGTAGCTATGAACCATGCAGAAGAAATTTCGAATTTAGAAGACACCTATGGCGAAAT
TTCAGAAGTCATATCATCAAGCTTTTATCAAATTGAAGATGTGTCTTATCGTATTCGCCAGCAGCTCGATTTATTAGAGT
ATGATCCAAAGCGTCTCAATTTTATTGAATCACGGCTAAATGAAATTAGTCATTTAAAGCGTAAATATGGTCAAAGCGTT
GATGAAATTCTAGAGTATGCAGCTCAAATTGAAGATGAAATTGATCGAATTGAGAACCGGGATACTCATGTTGAAAAAAT
TAAACAAAAACTGTCGAGCGTAGCAGAGGACTTGCTTGTTGAAGCGAAAAATGTTTCTGAGGTTAGAAAGCAGTTAGCTG
CGGAATTAACAGATAGTATTCATCAAGAGCTACAGGAGCTTTATATGGCTAAAACTATCTTTAATATCGTATTTGAAAAG
CTACCGCCAAACCAAGCTGATAGCGAACTGAGCGGTGGTTCTGTTAAGTTTACTAAGGATGGTATTGATTCAGTGGAGTT
TTATATTTCGACAAACCCAGGAGAGCCGCTAAAGCCACTTGCTAAAGTAGCTTCTGGTGGAGAGTTATCTCGTATTATGC
TTGCACTAAAAAGTATTTTCTCTAAGCATCAAGGTGTTACGTCCATTATTTTTGATGAAGTAGATACAGGAGTGAGCGGT
CGTGTCGCACAATCCATTGGTGAAAAAATTCACGCCATCTCTGTAGATTCCCAGGTGCTTTGTATTTCGCATCTTCCACA
GGTCGCTGCTATGGCGGATACACATTTGTTTATTTCAAAGCAAATCAAAGATGATCGCACTACAACATCTGTTTTACCGT
TAAACGAAGAAGAGAAAACAAAAGAAATTGCTCGCATGATTGCAGGAGCCGAAATAACCGATTTAACGCAGCAGCATGCC
CAAGAACTGTTAGGTCTAGCAGCAAAAATTAAACAATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-520)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1N6N653

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

61.955

100

0.621

Multiple sequence alignment