Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   EQO03_RS14755 Genome accession   NZ_CP040344
Coordinates   2848018..2848341 (-) Length   107 a.a.
NCBI ID   WP_000578882.1    Uniprot ID   -
Organism   Bacillus albus strain DLOU-Yingkou     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2843018..2853341
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQO03_RS14725 - 2843070..2843297 (+) 228 WP_000251865.1 hypothetical protein -
  EQO03_RS14730 - 2843453..2844739 (+) 1287 WP_157409482.1 D-alanyl-D-alanine carboxypeptidase family protein -
  EQO03_RS14735 sipW 2844931..2845500 (+) 570 WP_157409483.1 signal peptidase I SipW -
  EQO03_RS14740 - 2845563..2846150 (+) 588 WP_048526763.1 CalY family protein -
  EQO03_RS14745 - 2846270..2847076 (+) 807 WP_157409484.1 DUF4047 domain-containing protein -
  EQO03_RS14750 calY 2847350..2847943 (+) 594 WP_048526765.1 biofilm matrix protein CalY -
  EQO03_RS14755 sinR 2848018..2848341 (-) 324 WP_000578882.1 helix-turn-helix domain-containing protein Regulator
  EQO03_RS14760 - 2848421..2848555 (-) 135 WP_048526766.1 anti-repressor SinI family protein -
  EQO03_RS14765 inhA1 2848899..2851286 (+) 2388 WP_071758946.1 M6 family metalloprotease immune inhibitor InhA1 -
  EQO03_RS14770 - 2851458..2852825 (+) 1368 WP_048526768.1 aldehyde dehydrogenase -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12359.19 Da        Isoelectric Point: 8.5614

>NTDB_id=363524 EQO03_RS14755 WP_000578882.1 2848018..2848341(-) (sinR) [Bacillus albus strain DLOU-Yingkou]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTLLHDETTKENHLDSEWTQLV
KDAMSSGVSKEQFREFLEFTKWKQDQK

Nucleotide


Download         Length: 324 bp        

>NTDB_id=363524 EQO03_RS14755 WP_000578882.1 2848018..2848341(-) (sinR) [Bacillus albus strain DLOU-Yingkou]
ATGATTGGAGAACGTATAAAACGCCTGCGCTTACAAAAAGGTATTTCATTAACTGAACTTGCCGAAAAAGCCGGTGTTGC
TAAATCTTACATTAGTTCTATAGAACGAAATTTACAAAAGAACCCTTCCATTCAGTTTCTTGAAAAGATCGCAGCAGTTC
TACAAATTCCAGTTGATACTTTACTTCATGATGAAACAACAAAGGAAAATCACTTAGACTCCGAATGGACACAACTCGTT
AAAGATGCAATGAGCTCAGGTGTCTCCAAAGAACAATTTCGTGAATTTCTTGAATTTACAAAATGGAAGCAAGATCAAAA
ATAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-60)

Anti-repressor SinI (SinI)

(72-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

67.89

100

0.692

Multiple sequence alignment