Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   EQO03_RS08770 Genome accession   NZ_CP040344
Coordinates   1672026..1672310 (-) Length   94 a.a.
NCBI ID   WP_000843036.1    Uniprot ID   A0A9W5VII1
Organism   Bacillus albus strain DLOU-Yingkou     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1667026..1677310
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQO03_RS08735 tmk 1667179..1667805 (+) 627 WP_048526380.1 dTMP kinase -
  EQO03_RS08740 holB 1667842..1668825 (+) 984 WP_048526381.1 DNA polymerase III subunit delta' -
  EQO03_RS08745 - 1668831..1669658 (+) 828 WP_000272429.1 stage 0 sporulation family protein -
  EQO03_RS08750 yabA 1669673..1670023 (+) 351 WP_000412056.1 DNA replication initiation control protein YabA -
  EQO03_RS08755 - 1670144..1670884 (+) 741 WP_001055351.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  EQO03_RS08760 - 1670871..1671161 (+) 291 WP_048526382.1 GIY-YIG nuclease family protein -
  EQO03_RS08765 rsmI 1671130..1672005 (+) 876 WP_157409252.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  EQO03_RS08770 abrB 1672026..1672310 (-) 285 WP_000843036.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  EQO03_RS08775 metG 1672831..1674813 (+) 1983 WP_048526384.1 methionine--tRNA ligase -
  EQO03_RS08780 - 1674980..1675747 (+) 768 WP_048526385.1 TatD family hydrolase -
  EQO03_RS08785 rnmV 1675963..1676520 (+) 558 WP_000692830.1 ribonuclease M5 -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10490.17 Da        Isoelectric Point: 4.7174

>NTDB_id=363509 EQO03_RS08770 WP_000843036.1 1672026..1672310(-) (abrB) [Bacillus albus strain DLOU-Yingkou]
MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDGNLSLAEGKIILSKEGAE
QILNELQDYIETAK

Nucleotide


Download         Length: 285 bp        

>NTDB_id=363509 EQO03_RS08770 WP_000843036.1 1672026..1672310(-) (abrB) [Bacillus albus strain DLOU-Yingkou]
ATGAAATCTACTGGTATCGTTCGTAAAGTTGATGAATTAGGTCGTGTAGTAATTCCAATCGAATTACGCCGTACTTTAGG
TATTGCAGAAAAGGATGCTCTTGAAATCTACGTTGATGACGAGAAAATCATCTTAAAAAAATATAAGCCAAACATGACTT
GCCAAGTAACTGGTGAAGTATCTGATGGCAACCTATCTTTAGCTGAAGGTAAAATTATCTTAAGCAAAGAAGGCGCTGAG
CAAATCTTAAACGAACTTCAAGATTATATCGAAACAGCAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-89)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

85.106

100

0.851

Multiple sequence alignment