Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   EQO03_RS08570 Genome accession   NZ_CP040344
Coordinates   1634641..1635768 (+) Length   375 a.a.
NCBI ID   WP_048527915.1    Uniprot ID   -
Organism   Bacillus albus strain DLOU-Yingkou     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1629641..1640768
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQO03_RS08540 spoIIIJ 1629685..1630452 (-) 768 WP_048527919.1 YidC family membrane integrase SpoIIIJ -
  EQO03_RS08545 rnpA 1630505..1630852 (-) 348 WP_048527918.1 ribonuclease P protein component -
  EQO03_RS08550 rpmH 1630929..1631063 (-) 135 WP_000831901.1 50S ribosomal protein L34 -
  EQO03_RS08555 dnaA 1631629..1632969 (+) 1341 WP_048527917.1 chromosomal replication initiator protein DnaA -
  EQO03_RS08560 dnaN 1633149..1634288 (+) 1140 WP_048527916.1 DNA polymerase III subunit beta -
  EQO03_RS08565 yaaA 1634416..1634628 (+) 213 WP_000821367.1 S4 domain-containing protein YaaA -
  EQO03_RS08570 recF 1634641..1635768 (+) 1128 WP_048527915.1 DNA replication/repair protein RecF Machinery gene
  EQO03_RS08575 gyrB 1635807..1637729 (+) 1923 WP_048527914.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  EQO03_RS08580 gyrA 1637818..1640289 (+) 2472 WP_071758537.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 375 a.a.        Molecular weight: 43304.63 Da        Isoelectric Point: 6.7809

>NTDB_id=363507 EQO03_RS08570 WP_048527915.1 1634641..1635768(+) (recF) [Bacillus albus strain DLOU-Yingkou]
MFISEIQLKNYRNYEKLELSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDRELIRWDEDFGQIKGKLQKRNSS
LSLELNISKKGKKAKLNQLEQQKLSQYIGVMNVVMFAPEDLNLVKGSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQR
NHLLKKMQGNSKNEETMLDVFTLQLIEHGAKILQKRFEFLHLLQEWAAPIHRGISRGLEELEIVYKPSVDVSESMDLSKI
KEVYYESFQSVKQREIFRGTTLIGPHRDDLQFFVNSKNVQVFGSQGQQRTTALSLKLAEIELIYSEVKEYPILLLDDVLS
ELDDYRQSHLLNTIQGKVQTFVTTTSVDGIEHETLKEAKTIHVTNGTVDCEIDRA

Nucleotide


Download         Length: 1128 bp        

>NTDB_id=363507 EQO03_RS08570 WP_048527915.1 1634641..1635768(+) (recF) [Bacillus albus strain DLOU-Yingkou]
TTGTTTATTTCAGAAATACAATTAAAAAACTATCGCAATTATGAAAAGTTAGAGCTTTCCTTTGAAGATAAAGTAAATGT
CATTATCGGCGAAAATGCGCAAGGGAAAACGAATTTGATGGAAGCTATTTATGTTTTAGCGATGGCAAAATCTCATAGAA
CCTCTAATGATCGCGAGCTTATCCGTTGGGATGAAGATTTCGGTCAAATTAAAGGGAAATTACAAAAGAGAAATAGTTCT
TTGTCTTTGGAATTAAATATCTCGAAAAAAGGTAAAAAGGCAAAATTAAATCAACTTGAACAACAAAAATTGAGTCAATA
TATTGGCGTGATGAATGTTGTCATGTTTGCCCCAGAAGATTTAAATCTTGTAAAAGGAAGCCCTCAAGTAAGAAGACGCT
TTTTAGATATGGAATTAGGCCAAATAGCTCCCGTCTATTTGTATGAATTGAGTCAATATCAAAAGGTGCTCACACAACGA
AATCACTTGCTGAAAAAGATGCAAGGGAATAGTAAGAATGAGGAAACGATGTTGGATGTATTTACACTTCAACTTATTGA
GCATGGTGCAAAAATATTGCAAAAACGATTTGAGTTTTTGCATTTACTACAGGAATGGGCAGCTCCAATTCATCGCGGTA
TAAGCCGTGGATTAGAAGAATTAGAAATTGTCTATAAACCAAGTGTAGATGTATCAGAATCAATGGATTTGTCGAAAATA
AAAGAAGTATACTATGAAAGTTTTCAATCTGTGAAACAACGTGAAATTTTCCGTGGTACGACTTTAATTGGTCCTCATCG
TGATGATTTACAATTCTTCGTTAATAGTAAAAATGTTCAAGTCTTTGGTTCTCAAGGACAACAACGAACGACCGCACTGT
CCCTAAAATTAGCTGAAATTGAATTGATTTACTCAGAAGTTAAGGAATATCCGATTCTTTTATTAGATGATGTATTATCA
GAATTAGATGATTATCGTCAATCGCATCTGTTAAATACAATTCAAGGAAAAGTGCAAACATTTGTGACAACGACGAGTGT
CGACGGAATTGAACACGAAACATTAAAAGAAGCGAAAACAATTCATGTAACGAACGGCACGGTAGATTGTGAAATAGATA
GGGCGTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-348)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

66.576

98.133

0.653

Multiple sequence alignment