Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   EQO03_RS02515 Genome accession   NZ_CP040344
Coordinates   471547..472590 (-) Length   347 a.a.
NCBI ID   WP_048531150.1    Uniprot ID   A0A8T9Z920
Organism   Bacillus albus strain DLOU-Yingkou     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 466547..477590
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQO03_RS02470 - 466974..467174 (-) 201 WP_000106081.1 YqzE family protein -
  EQO03_RS02475 aroK 467213..467710 (-) 498 WP_048531135.1 shikimate kinase AroK -
  EQO03_RS02480 - 467829..468479 (-) 651 WP_048531136.1 2OG-Fe(II) oxygenase -
  EQO03_RS02485 comGG 468657..469028 (-) 372 WP_071757287.1 competence type IV pilus minor pilin ComGG -
  EQO03_RS02490 comGF 469025..469495 (-) 471 WP_157409059.1 competence type IV pilus minor pilin ComGF -
  EQO03_RS02495 comGE 469465..469767 (-) 303 WP_071757286.1 competence type IV pilus minor pilin ComGE -
  EQO03_RS02500 comGD 469760..470215 (-) 456 WP_048531144.1 comG operon protein ComGD -
  EQO03_RS02505 comGC 470212..470511 (-) 300 WP_157409060.1 competence type IV pilus major pilin ComGC -
  EQO03_RS02510 comGB 470523..471554 (-) 1032 WP_053082876.1 competence type IV pilus assembly protein ComGB -
  EQO03_RS02515 comGA 471547..472590 (-) 1044 WP_048531150.1 competence protein ComGA Machinery gene
  EQO03_RS02520 - 472796..473491 (+) 696 WP_071757285.1 metalloregulator ArsR/SmtB family transcription factor -
  EQO03_RS02525 - 473617..473859 (+) 243 WP_000440719.1 DUF2626 domain-containing protein -
  EQO03_RS02530 - 473967..475361 (+) 1395 WP_001094339.1 L-cystine transporter -
  EQO03_RS02535 - 475578..475793 (-) 216 WP_071757284.1 DUF3912 family protein -
  EQO03_RS02540 - 476047..476358 (+) 312 WP_001093241.1 hypothetical protein -
  EQO03_RS02545 - 476399..476887 (-) 489 WP_071757283.1 hypothetical protein -
  EQO03_RS02550 - 476967..477341 (-) 375 WP_071757282.1 nucleoside 2-deoxyribosyltransferase -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 39378.84 Da        Isoelectric Point: 8.8395

>NTDB_id=363489 EQO03_RS02515 WP_048531150.1 471547..472590(-) (comGA) [Bacillus albus strain DLOU-Yingkou]
MNGIESFANMILKEACRVQASDLHIVPRKKDVAVQLRIGKDLMTKQYIEKEFGEKLVSHFKFLASMDIGERRKPQNGSLY
LQMDGQEVYLRLSTLPTVYQESLVIRLHLQASIQPLSHLSLFPSTAKKLLSFLHYSHGLLVFTGPTGSGKTTTMYALLEV
IRKKKTRRIVTLEDPVEKRNDDVLQIQINEKAGITYEAGLKAILRHDPDIILVGEIRDEETAKIAIRASLTGHLVMTTLH
TNDAKGAILRFMDFGITRQEIEQSLLAIAAQRLVELKCPFCKRKCSTLCKSMRQVRQASIYELLYGYELKQAIKEANGEC
VTYEHETLESSLRKGYALGFLEEDVYV

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=363489 EQO03_RS02515 WP_048531150.1 471547..472590(-) (comGA) [Bacillus albus strain DLOU-Yingkou]
ATGAATGGAATTGAAAGCTTTGCGAATATGATTTTGAAAGAGGCGTGTAGGGTACAAGCTTCGGATTTACACATCGTGCC
CCGGAAGAAGGATGTTGCGGTTCAACTACGTATAGGAAAAGATTTAATGACGAAACAATACATTGAAAAGGAATTTGGAG
AAAAACTTGTTTCACACTTTAAATTTTTAGCATCCATGGATATAGGGGAGAGGCGGAAGCCACAAAATGGTTCATTGTAT
TTACAAATGGATGGACAAGAAGTGTATTTGCGCCTTTCCACGCTTCCAACCGTATATCAAGAAAGTCTCGTTATTCGTCT
TCATTTACAAGCATCTATTCAGCCGTTATCTCATCTTTCGTTATTTCCAAGTACAGCGAAGAAACTTCTTTCCTTTTTAC
ATTATTCGCATGGGTTACTCGTCTTTACGGGACCGACTGGTTCAGGAAAGACAACAACAATGTATGCATTATTAGAGGTA
ATTAGAAAAAAGAAAACACGTCGCATCGTTACACTGGAAGATCCAGTTGAAAAAAGAAATGACGATGTATTACAAATTCA
AATAAATGAAAAAGCAGGTATCACATATGAGGCGGGACTGAAGGCTATTTTACGCCATGATCCAGATATTATTTTAGTCG
GTGAAATTCGTGATGAAGAAACAGCAAAAATTGCTATAAGAGCAAGTTTGACTGGACATTTAGTAATGACGACATTGCAT
ACGAATGATGCGAAAGGAGCGATACTTCGGTTTATGGACTTTGGCATAACAAGGCAAGAGATTGAACAATCTTTATTGGC
TATAGCTGCACAGCGACTTGTCGAATTGAAGTGTCCGTTTTGCAAAAGAAAGTGCTCAACTTTATGTAAATCAATGAGGC
AGGTAAGACAAGCGAGTATTTATGAGTTGTTATATGGATATGAGTTAAAACAAGCGATTAAAGAAGCAAACGGGGAATGT
GTCACATACGAGCATGAGACATTAGAATCTTCGCTACGAAAAGGATACGCTTTAGGATTTTTAGAAGAGGATGTGTATGT
TTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

57.925

100

0.579
  pilB Vibrio campbellii strain DS40M4

35.977

100

0.366

Multiple sequence alignment