Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   EQO03_RS02170 Genome accession   NZ_CP040344
Coordinates   420834..422573 (-) Length   579 a.a.
NCBI ID   WP_157409053.1    Uniprot ID   A0AAU0QQP1
Organism   Bacillus albus strain DLOU-Yingkou     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 415834..427573
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQO03_RS02160 spo0A 418335..419129 (-) 795 WP_033686380.1 sporulation transcription factor Spo0A Regulator
  EQO03_RS02165 spoIVB 419417..420715 (-) 1299 WP_048531049.1 SpoIVB peptidase -
  EQO03_RS02170 recN 420834..422573 (-) 1740 WP_157409053.1 DNA repair protein RecN Machinery gene
  EQO03_RS02175 argR 422841..423290 (-) 450 WP_001032581.1 arginine repressor ArgR -
  EQO03_RS02180 - 423433..424272 (-) 840 WP_048531053.1 TlyA family RNA methyltransferase -
  EQO03_RS02185 dxs 424276..426168 (-) 1893 WP_048531055.1 1-deoxy-D-xylulose-5-phosphate synthase -
  EQO03_RS02190 ispA 426471..427361 (-) 891 WP_048531057.1 (2E,6E)-farnesyl diphosphate synthase -

Sequence

Protein


Download         Length: 579 a.a.        Molecular weight: 65763.87 Da        Isoelectric Point: 4.8556

>NTDB_id=363488 EQO03_RS02170 WP_157409053.1 420834..422573(-) (recN) [Bacillus albus strain DLOU-Yingkou]
MLSELSIRNFAIIEALNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRGSAEFVRYGTEKAEIEGLFYVEDDKHPCIEK
AEELDIEIEDGMIILKRDIAANGKSVCRVNGKLVTLSILKEIGKTLVDIHGQHETQDLMNEERHLFMLDHFDGDRIVKQL
DIYQNVYADYEKLKKQLKSLSENEQQMAHRLDLIQFQHEEIRKADLKMDEENELTEERLQISNFEKIYKALGDAYRSLSA
DGQGLDNVRSAMGQMESITHLDEVYQENHDSIANSYYLLEEVAYQLREKLDMMEYDPNRLDEIETRLNEIRMLKRKYGNT
VEEILAYADKIEQEIFTIENKDVHIETTKKQLKELESVILKEATLLSNMRHELAEHLTNAIHQELKELYMGKTKFEVRIM
KREGNVEEPLVEGAPVRLTADGYDHVEFYISTNPGEPLKPLSKVASGGELSRIILALKSIFSKHQGVASVIFDEVDTGVS
GRVAQAIAEKIYRVSVNSQVLCITHLPQVASMADSHLFIRKQVANDRTITSVTVLTMEDKVTEIARMISGVEITDLTTEH
AKELLTQAHHFKQTAEAIQ

Nucleotide


Download         Length: 1740 bp        

>NTDB_id=363488 EQO03_RS02170 WP_157409053.1 420834..422573(-) (recN) [Bacillus albus strain DLOU-Yingkou]
TTGTTATCGGAATTATCGATTAGAAACTTTGCTATTATTGAGGCATTAAATATTTCTTTTCAAAAAGGGTTAACGGTTTT
AAGTGGGGAAACAGGAGCTGGAAAATCGATTATTATTGATGCGATTAGTTTACTTGTAGGTGGTCGTGGTTCAGCGGAAT
TCGTTCGATACGGAACAGAAAAAGCTGAGATAGAGGGACTATTTTATGTAGAAGATGATAAGCATCCGTGCATTGAAAAG
GCAGAAGAATTGGACATAGAAATCGAAGACGGCATGATTATTTTGAAGCGTGATATCGCTGCAAATGGAAAAAGCGTATG
TCGTGTAAATGGGAAATTAGTCACCCTTAGTATATTAAAAGAAATTGGAAAAACACTTGTTGATATTCATGGGCAGCACG
AAACGCAAGACTTAATGAATGAAGAGCGTCACTTATTTATGCTTGATCATTTTGATGGAGATCGTATTGTTAAACAATTG
GATATATATCAAAACGTATACGCTGATTATGAGAAGTTAAAAAAACAGTTAAAATCGTTAAGTGAAAATGAACAACAAAT
GGCGCATCGCTTAGATTTAATTCAATTCCAGCATGAAGAAATCCGTAAGGCGGATTTAAAGATGGATGAAGAAAATGAAT
TAACTGAAGAACGATTGCAAATTTCTAATTTCGAAAAAATTTATAAAGCATTAGGCGATGCATATCGATCGTTAAGCGCG
GACGGACAAGGATTAGATAATGTAAGAAGCGCAATGGGACAAATGGAAAGTATTACACATTTAGATGAAGTGTATCAAGA
AAATCATGATTCAATTGCAAATAGCTATTACTTATTAGAAGAAGTTGCGTATCAACTAAGAGAAAAGCTCGATATGATGG
AATATGATCCGAATCGTTTAGATGAAATCGAAACGCGTTTAAATGAAATTCGTATGCTAAAGAGAAAATATGGAAATACT
GTAGAAGAGATTTTAGCGTATGCTGATAAAATTGAACAAGAAATTTTTACGATTGAAAATAAAGACGTTCATATTGAAAC
GACGAAGAAGCAGTTAAAGGAATTAGAAAGTGTTATTCTGAAAGAAGCAACGTTGTTAAGTAATATGCGTCATGAACTTG
CAGAGCATCTTACAAATGCCATTCATCAGGAATTAAAAGAATTATATATGGGAAAAACAAAATTTGAAGTGAGAATTATG
AAGAGAGAAGGAAATGTGGAAGAGCCTCTTGTGGAGGGAGCACCGGTAAGACTTACAGCGGATGGCTACGATCATGTGGA
ATTTTATATTTCAACCAATCCAGGCGAACCGTTAAAACCACTTTCAAAGGTCGCTTCTGGCGGAGAGTTATCTCGTATTA
TTTTAGCTTTAAAAAGCATTTTTTCTAAGCATCAAGGTGTTGCATCAGTTATTTTTGATGAGGTGGATACTGGTGTAAGT
GGCCGCGTCGCACAGGCTATTGCGGAAAAAATTTATCGAGTATCAGTAAACTCACAAGTGCTTTGTATTACGCACTTACC
TCAAGTCGCTTCAATGGCGGATTCACATTTATTTATTCGAAAACAAGTAGCGAATGATCGAACAATTACGTCAGTTACTG
TTTTAACTATGGAGGATAAAGTAACAGAAATAGCTCGAATGATTTCTGGTGTGGAAATTACAGATTTAACGACAGAACAT
GCGAAAGAATTACTTACGCAAGCGCATCATTTTAAACAGACAGCAGAGGCTATCCAGTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

59.931

100

0.599

Multiple sequence alignment