Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   EQO03_RS01320 Genome accession   NZ_CP040344
Coordinates   269493..269927 (-) Length   144 a.a.
NCBI ID   WP_000811502.1    Uniprot ID   A0A5C5ACH0
Organism   Bacillus albus strain DLOU-Yingkou     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 264493..274927
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQO03_RS01300 - 264934..265491 (+) 558 WP_071757371.1 PadR family transcriptional regulator -
  EQO03_RS01305 - 265640..266071 (-) 432 WP_157409029.1 NUDIX hydrolase -
  EQO03_RS01310 metE 266742..269030 (+) 2289 WP_071757369.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -
  EQO03_RS01315 comJ 269068..269457 (-) 390 WP_048530770.1 competence protein ComJ -
  EQO03_RS01320 nucA/comI 269493..269927 (-) 435 WP_000811502.1 DNA-entry nuclease Machinery gene
  EQO03_RS01325 - 270164..270913 (+) 750 WP_157409030.1 DUF3967 domain-containing protein -
  EQO03_RS01330 kinB 270967..272241 (-) 1275 WP_048530774.1 sporulation sensor histidine kinase KinB -
  EQO03_RS01335 - 272550..272750 (+) 201 WP_000929281.1 hypothetical protein -
  EQO03_RS01340 - 272874..274037 (+) 1164 WP_048530776.1 aminotransferase A -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16010.38 Da        Isoelectric Point: 8.4331

>NTDB_id=363486 EQO03_RS01320 WP_000811502.1 269493..269927(-) (nucA/comI) [Bacillus albus strain DLOU-Yingkou]
MKQLKGIIISIIAILSIVVAVYEVLVPEETSIKKTNAYDQVLEFPKERYPETGKHITDAIKEGHSEVCTIDRGGAADRRK
LSLAPYPSKKGYDRDEWPMAMCKEGGKGAHIEYISPADNRGAGSWVGNKLDKYPDGTRVKFDVK

Nucleotide


Download         Length: 435 bp        

>NTDB_id=363486 EQO03_RS01320 WP_000811502.1 269493..269927(-) (nucA/comI) [Bacillus albus strain DLOU-Yingkou]
ATGAAGCAATTAAAAGGTATTATCATTTCAATTATTGCAATTCTTTCTATTGTAGTAGCGGTGTATGAAGTACTTGTTCC
AGAGGAAACAAGTATCAAAAAAACAAATGCGTATGATCAAGTTCTAGAATTTCCGAAAGAGCGATATCCAGAGACAGGAA
AACATATTACGGATGCGATAAAAGAAGGGCATTCAGAAGTTTGTACAATCGACCGTGGTGGCGCTGCGGATAGAAGAAAA
TTATCGTTAGCTCCATATCCATCAAAAAAAGGATATGATCGTGATGAATGGCCCATGGCGATGTGTAAAGAAGGCGGAAA
AGGAGCACATATTGAATATATAAGTCCAGCAGATAACCGCGGAGCAGGCTCTTGGGTAGGAAATAAGTTAGATAAATACC
CAGATGGTACGCGTGTGAAGTTTGACGTAAAGTAG

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(48-139)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5C5ACH0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

71.171

77.083

0.549

Multiple sequence alignment