Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   EQO03_RS01260 Genome accession   NZ_CP040344
Coordinates   257844..258302 (+) Length   152 a.a.
NCBI ID   WP_000804864.1    Uniprot ID   -
Organism   Bacillus albus strain DLOU-Yingkou     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 252844..263302
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQO03_RS01245 - 253515..253751 (+) 237 WP_048530745.1 hypothetical protein -
  EQO03_RS01250 - 253911..256019 (-) 2109 WP_071758747.1 polyphosphate kinase -
  EQO03_RS01255 ppx 256128..257666 (-) 1539 WP_071758746.1 exopolyphosphatase -
  EQO03_RS01260 kre 257844..258302 (+) 459 WP_000804864.1 YkyB family protein Regulator
  EQO03_RS01265 - 258334..258996 (-) 663 WP_071758745.1 YkyA family protein -
  EQO03_RS01270 - 259640..260281 (-) 642 WP_048530754.1 diguanylate cyclase domain-containing protein -
  EQO03_RS01275 - 260446..260679 (+) 234 WP_071758744.1 phage holin -
  EQO03_RS01280 - 260712..261212 (-) 501 WP_071758743.1 hypothetical protein -
  EQO03_RS01285 - 261616..263157 (+) 1542 WP_071758742.1 MDR family MFS transporter -

Sequence

Protein


Download         Length: 152 a.a.        Molecular weight: 17757.49 Da        Isoelectric Point: 10.6793

>NTDB_id=363485 EQO03_RS01260 WP_000804864.1 257844..258302(+) (kre) [Bacillus albus strain DLOU-Yingkou]
MKPSQPQSQLQNQHSINRLAQSIFVVNRHAKAATNPKYLYWLKKTALERLIAEKKAIKEGLHFSRNPRFSQQQSDVLIRL
GDYFFHIPPTKEDFRILPHLGHLESSYRNPKTTLSLTVAKKTLQDYIGPEALKQEKKLSEPVPWYSRTYTKK

Nucleotide


Download         Length: 459 bp        

>NTDB_id=363485 EQO03_RS01260 WP_000804864.1 257844..258302(+) (kre) [Bacillus albus strain DLOU-Yingkou]
ATGAAACCTTCACAACCACAATCTCAATTACAAAACCAACATTCTATTAATCGACTAGCTCAATCTATTTTCGTTGTGAA
TCGTCATGCTAAAGCTGCAACTAATCCGAAGTATTTATACTGGTTAAAAAAGACGGCTTTAGAACGCTTAATTGCTGAAA
AAAAAGCTATTAAAGAAGGATTACATTTTTCTAGAAATCCACGTTTTAGCCAACAACAATCCGATGTTCTTATACGTTTA
GGTGATTATTTTTTCCATATTCCTCCTACCAAAGAAGATTTTCGAATCCTACCACACCTTGGCCATCTTGAATCCTCCTA
TCGAAATCCGAAAACAACCTTATCTTTAACAGTAGCAAAAAAGACACTTCAAGATTACATTGGTCCTGAAGCACTGAAAC
AAGAAAAAAAATTAAGTGAACCTGTCCCGTGGTATAGTCGTACGTATACAAAAAAATAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(16-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

64.655

76.316

0.493

Multiple sequence alignment