Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   EQK03_RS26345 Genome accession   NZ_CP040342
Coordinates   5197347..5197670 (+) Length   107 a.a.
NCBI ID   WP_000578884.1    Uniprot ID   A0A9W5R9C5
Organism   Bacillus cereus strain DLOU-Weihai     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 5192347..5202670
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQK03_RS26330 - 5192861..5194228 (-) 1368 WP_000028370.1 aldehyde dehydrogenase -
  EQK03_RS26335 inhA1 5194400..5196790 (-) 2391 WP_001035937.1 M6 family metalloprotease immune inhibitor InhA1 -
  EQK03_RS26340 - 5197133..5197267 (+) 135 WP_000276219.1 anti-repressor SinI family protein -
  EQK03_RS26345 sinR 5197347..5197670 (+) 324 WP_000578884.1 helix-turn-helix domain-containing protein Regulator
  EQK03_RS26350 calY 5197737..5198330 (-) 594 WP_000053714.1 biofilm matrix protein CalY -
  EQK03_RS26355 - 5198708..5199523 (-) 816 WP_157418863.1 DUF4047 domain-containing protein -
  EQK03_RS26360 - 5199658..5200245 (-) 588 WP_000172852.1 CalY family protein -
  EQK03_RS26365 - 5200306..5200875 (-) 570 WP_000767792.1 signal peptidase I -
  EQK03_RS26370 - 5201066..5202352 (-) 1287 WP_069604300.1 D-alanyl-D-alanine carboxypeptidase family protein -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12335.17 Da        Isoelectric Point: 9.6244

>NTDB_id=363477 EQK03_RS26345 WP_000578884.1 5197347..5197670(+) (sinR) [Bacillus cereus strain DLOU-Weihai]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTLLHDETTKETNLDSEWTQLV
KDAMNSGVSKEQFREFLEFTKWKQNNK

Nucleotide


Download         Length: 324 bp        

>NTDB_id=363477 EQK03_RS26345 WP_000578884.1 5197347..5197670(+) (sinR) [Bacillus cereus strain DLOU-Weihai]
ATGATTGGAGAACGTATAAAACGCCTTCGTTTACAAAAAGGGATTTCATTAACTGAACTTGCCGAAAAAGCTGGCGTTGC
TAAATCTTACATTAGTTCTATAGAACGAAATTTACAAAAAAACCCTTCCATTCAGTTTCTTGAAAAGATCGCAGCAGTTC
TACAAATTCCAGTTGATACTTTACTTCATGATGAAACAACAAAGGAAACTAACCTAGACTCCGAATGGACACAACTCGTT
AAAGATGCAATGAATTCTGGTGTCTCCAAAGAACAATTTCGTGAATTTCTTGAATTTACAAAGTGGAAGCAAAATAATAA
ATAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-60)

Anti-repressor SinI (SinI)

(72-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

66.972

100

0.682

Multiple sequence alignment