Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   EQK03_RS25055 Genome accession   NZ_CP040342
Coordinates   4954227..4954829 (+) Length   200 a.a.
NCBI ID   WP_000155598.1    Uniprot ID   A0A9W5VGG2
Organism   Bacillus cereus strain DLOU-Weihai     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4949227..4959829
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQK03_RS25015 gpsB 4949493..4949828 (-) 336 WP_000622431.1 cell division regulator GpsB -
  EQK03_RS25020 - 4949926..4950480 (-) 555 WP_000862910.1 DUF1273 domain-containing protein -
  EQK03_RS25025 - 4950537..4950965 (-) 429 WP_000546270.1 CotD family spore coat protein -
  EQK03_RS25030 - 4951121..4951684 (-) 564 WP_016122190.1 YppG family protein -
  EQK03_RS25035 - 4951861..4952052 (+) 192 WP_000242652.1 YppF family protein -
  EQK03_RS25040 - 4952079..4952423 (-) 345 WP_000786939.1 YppE family protein -
  EQK03_RS25045 - 4952439..4952681 (-) 243 WP_001252036.1 hypothetical protein -
  EQK03_RS29240 - 4952767..4952946 (+) 180 WP_001987054.1 hypothetical protein -
  EQK03_RS25050 - 4953098..4954123 (-) 1026 WP_042866562.1 DUF2515 domain-containing protein -
  EQK03_RS25055 recU 4954227..4954829 (+) 603 WP_000155598.1 Holliday junction resolvase RecU Machinery gene
  EQK03_RS25060 - 4954896..4957589 (+) 2694 WP_016122188.1 PBP1A family penicillin-binding protein -
  EQK03_RS25065 - 4957615..4958133 (-) 519 WP_016122187.1 YpoC family protein -
  EQK03_RS25070 nth 4958137..4958784 (-) 648 WP_000933030.1 endonuclease III -
  EQK03_RS25075 dnaD 4958800..4959507 (-) 708 WP_000728542.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 23355.63 Da        Isoelectric Point: 9.4336

>NTDB_id=363475 EQK03_RS25055 WP_000155598.1 4954227..4954829(+) (recU) [Bacillus cereus strain DLOU-Weihai]
MTIRYPNGKRYNQASQPQKTPIKTHTYSNRGMSLEEELNETNQYYLTHNIACVHKKPTPLQIVKVDYPARSAAVVKEAYF
KQPSTTDYNGVYKGKYIDFEAKETKNKTSFPLQNFHLHQIEHMKQVVAHNGIAFVIIKFTLFDEFYLLDAKHIIAFWNRQ
NTGGRKSITKEEIEEHGSLLSCGYHPRIDYIRVLDMVYFS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=363475 EQK03_RS25055 WP_000155598.1 4954227..4954829(+) (recU) [Bacillus cereus strain DLOU-Weihai]
ATGACCATTCGTTACCCAAATGGAAAAAGGTATAATCAAGCTTCACAACCTCAAAAAACACCTATAAAAACACATACTTA
TAGTAATAGAGGTATGTCCCTTGAAGAGGAATTGAATGAAACAAATCAATATTACTTAACCCATAATATTGCATGTGTAC
ATAAAAAGCCTACACCTCTTCAAATTGTAAAAGTAGATTACCCCGCTCGAAGTGCTGCAGTGGTAAAAGAAGCGTATTTT
AAACAACCTTCTACAACAGATTACAACGGTGTATACAAAGGGAAATACATCGATTTTGAAGCAAAGGAAACAAAAAATAA
AACTAGTTTCCCACTTCAAAACTTCCACCTTCATCAAATTGAACATATGAAGCAAGTGGTTGCTCATAATGGAATTGCAT
TTGTTATTATTAAATTTACACTTTTTGATGAATTTTATTTACTAGATGCAAAACATATTATTGCATTTTGGAATCGTCAA
AATACTGGTGGACGCAAGTCGATTACGAAAGAAGAAATAGAAGAGCATGGATCCTTATTATCATGCGGTTATCACCCTCG
GATTGACTATATCCGTGTACTAGACATGGTTTATTTTTCGTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(30-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

63.5

100

0.635

Multiple sequence alignment