Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   EQK03_RS23150 Genome accession   NZ_CP040342
Coordinates   4566047..4566334 (-) Length   95 a.a.
NCBI ID   WP_000648324.1    Uniprot ID   -
Organism   Bacillus cereus strain DLOU-Weihai     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 4561047..4571334
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQK03_RS23120 - 4561448..4561810 (-) 363 WP_001198796.1 DUF805 domain-containing protein -
  EQK03_RS29225 - 4561954..4562160 (-) 207 WP_001101741.1 hypothetical protein -
  EQK03_RS23130 - 4562209..4563384 (-) 1176 WP_001082492.1 MFS transporter -
  EQK03_RS23135 - 4563432..4564367 (-) 936 WP_157418790.1 aldo/keto reductase -
  EQK03_RS23140 - 4564474..4564782 (+) 309 WP_001259906.1 helix-turn-helix transcriptional regulator -
  EQK03_RS23145 - 4564824..4565771 (-) 948 WP_000099746.1 serine protease -
  EQK03_RS23150 abrB 4566047..4566334 (-) 288 WP_000648324.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  EQK03_RS23155 - 4566451..4568331 (-) 1881 WP_001025988.1 ABC transporter permease -
  EQK03_RS23160 nadE 4568602..4569420 (+) 819 WP_000174901.1 ammonia-dependent NAD(+) synthetase -
  EQK03_RS23165 - 4569470..4569931 (-) 462 WP_000024999.1 NUDIX hydrolase -
  EQK03_RS23170 - 4569963..4570160 (-) 198 WP_006929550.1 DUF4083 domain-containing protein -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10587.32 Da        Isoelectric Point: 4.8408

>NTDB_id=363474 EQK03_RS23150 WP_000648324.1 4566047..4566334(-) (abrB) [Bacillus cereus strain DLOU-Weihai]
MKATGVIRKVDELGRIVIPKELRDVLGIQIKSPLEIFVEADKIILQKYQPYNACQITGDVSEQNISLANGNITVGIEGAE
YLVKEIEKFLNKSEV

Nucleotide


Download         Length: 288 bp        

>NTDB_id=363474 EQK03_RS23150 WP_000648324.1 4566047..4566334(-) (abrB) [Bacillus cereus strain DLOU-Weihai]
ATGAAAGCAACAGGAGTTATTCGAAAAGTAGACGAATTAGGACGAATTGTTATCCCTAAAGAATTACGCGATGTATTGGG
AATACAAATCAAATCACCGCTTGAAATTTTTGTAGAAGCAGATAAAATCATTTTACAAAAATATCAACCTTACAATGCTT
GCCAAATCACAGGTGATGTTTCAGAGCAGAACATATCATTAGCAAATGGAAATATTACTGTTGGGATAGAGGGAGCGGAA
TATTTAGTAAAAGAAATAGAAAAGTTTTTAAACAAGAGTGAGGTTTAG

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.556

94.737

0.526

Multiple sequence alignment