Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   EQK03_RS20945 Genome accession   NZ_CP040342
Coordinates   4139063..4139341 (-) Length   92 a.a.
NCBI ID   WP_000842216.1    Uniprot ID   A0A9W5QHH7
Organism   Bacillus cereus strain DLOU-Weihai     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 4134063..4144341
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQK03_RS20930 - 4135553..4136212 (-) 660 WP_000682539.1 CatB-related O-acetyltransferase -
  EQK03_RS20935 - 4136466..4137224 (-) 759 WP_000347986.1 TSUP family transporter -
  EQK03_RS20940 - 4137292..4138542 (-) 1251 WP_049107771.1 hypothetical protein -
  EQK03_RS20945 abrB 4139063..4139341 (-) 279 WP_000842216.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  EQK03_RS20950 - 4139482..4140360 (-) 879 WP_000397977.1 helix-turn-helix domain-containing protein -
  EQK03_RS20955 - 4140737..4140988 (+) 252 WP_098391767.1 LuxR C-terminal-related transcriptional regulator -
  EQK03_RS20960 - 4141228..4141830 (-) 603 WP_049107770.1 hypothetical protein -
  EQK03_RS20965 - 4141856..4142665 (-) 810 WP_000664544.1 papain-like cysteine protease family protein -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10378.28 Da        Isoelectric Point: 10.0092

>NTDB_id=363472 EQK03_RS20945 WP_000842216.1 4139063..4139341(-) (abrB) [Bacillus cereus strain DLOU-Weihai]
MKSRGITRKADSMGRIVIPMEIRRSLGIVEKDSLEMFIEEDQIILRKYQSPRACALTGDISDSNISLANGKIIVSPNGME
LLIKKLQQYLLK

Nucleotide


Download         Length: 279 bp        

>NTDB_id=363472 EQK03_RS20945 WP_000842216.1 4139063..4139341(-) (abrB) [Bacillus cereus strain DLOU-Weihai]
ATGAAATCAAGAGGAATTACTCGTAAAGCAGATAGCATGGGGCGTATTGTTATTCCAATGGAAATAAGACGGAGTTTAGG
AATTGTAGAAAAAGATTCTCTTGAAATGTTTATAGAAGAGGACCAGATTATTTTACGAAAATATCAATCTCCAAGAGCTT
GTGCACTTACAGGGGATATTTCAGACAGCAATATTTCGTTAGCGAATGGGAAGATTATTGTAAGTCCAAACGGGATGGAA
CTGTTAATAAAGAAGTTACAGCAATATCTTTTAAAGTAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-89)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(9-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

50

97.826

0.489

Multiple sequence alignment