Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   EQK03_RS11615 Genome accession   NZ_CP040342
Coordinates   2287002..2287748 (+) Length   248 a.a.
NCBI ID   WP_000487015.1    Uniprot ID   A0A9W5E8B7
Organism   Bacillus cereus strain DLOU-Weihai     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2282002..2292748
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQK03_RS11585 - 2282291..2284435 (+) 2145 WP_000091509.1 HD family phosphohydrolase -
  EQK03_RS11590 ybeY 2284432..2284902 (+) 471 WP_157418499.1 rRNA maturation RNase YbeY -
  EQK03_RS11595 - 2284899..2285252 (+) 354 WP_000715466.1 diacylglycerol kinase family protein -
  EQK03_RS11600 - 2285352..2285750 (+) 399 WP_001086285.1 cytidine deaminase -
  EQK03_RS11605 era 2285743..2286648 (+) 906 WP_001080230.1 GTPase Era -
  EQK03_RS11610 - 2286825..2286968 (+) 144 WP_000883924.1 YqzL family protein -
  EQK03_RS11615 recO 2287002..2287748 (+) 747 WP_000487015.1 DNA repair protein RecO Machinery gene
  EQK03_RS11620 - 2287856..2288488 (+) 633 WP_000583756.1 helix-turn-helix transcriptional regulator -
  EQK03_RS11625 - 2288518..2289330 (+) 813 WP_000368944.1 pyruvate, water dikinase regulatory protein -
  EQK03_RS28500 - 2289966..2290109 (+) 144 WP_000479733.1 hypothetical protein -
  EQK03_RS11630 dnaG 2290191..2291987 (+) 1797 WP_000528223.1 DNA primase -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 28634.21 Da        Isoelectric Point: 8.0566

>NTDB_id=363462 EQK03_RS11615 WP_000487015.1 2287002..2287748(+) (recO) [Bacillus cereus strain DLOU-Weihai]
MFQKVEGIVIRTTDYGETNKIVTIFSRELGKVSAMARGSKKPKSRLASVSQLMTHGHFLIQMGSGLGTLQQGEIISTMKE
IREDIFLTAYASFIVELTDKATEDKKHNPYLFEMLYQTLHYMCEGVDPEVLSLIYQTKMLPVLGMRPYFDTCAICHQETD
FVAFSVREGGFLCSRHAEQDPYRIPVGEAVHKLLRLFFHFDLHRLGNVSVKDSTKKQMRLVLNTYYDEYCGIYLKSRRFL
EQLDKFQI

Nucleotide


Download         Length: 747 bp        

>NTDB_id=363462 EQK03_RS11615 WP_000487015.1 2287002..2287748(+) (recO) [Bacillus cereus strain DLOU-Weihai]
ATGTTTCAAAAAGTTGAGGGCATCGTTATCCGTACGACAGATTACGGAGAAACGAACAAAATTGTTACAATATTCTCAAG
AGAACTTGGTAAGGTAAGTGCAATGGCAAGAGGGTCAAAAAAACCGAAAAGCCGATTAGCATCTGTGTCGCAATTAATGA
CACATGGCCATTTTCTAATTCAAATGGGATCTGGGCTTGGAACATTGCAACAAGGCGAGATTATTTCAACTATGAAAGAA
ATTCGCGAGGATATATTTTTAACTGCTTATGCATCATTTATTGTTGAGTTAACTGATAAAGCAACAGAAGATAAAAAACA
TAATCCGTATTTATTTGAAATGTTATATCAAACGTTGCATTATATGTGTGAGGGTGTTGATCCAGAAGTATTATCATTAA
TTTATCAAACGAAAATGCTTCCGGTATTAGGGATGCGCCCGTACTTTGATACATGTGCGATTTGTCATCAAGAAACAGAC
TTTGTCGCCTTCTCCGTAAGGGAAGGCGGTTTTCTGTGCTCACGTCATGCAGAGCAAGACCCATATCGTATACCGGTAGG
AGAAGCTGTTCATAAATTATTACGCCTTTTCTTCCATTTCGATTTACATAGGCTCGGAAATGTATCGGTAAAGGATAGCA
CAAAAAAACAAATGCGTTTAGTATTGAATACATATTATGATGAATATTGCGGAATTTATTTGAAATCAAGACGTTTTTTA
GAACAACTTGATAAGTTTCAAATATAA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-77)

Recombination protein O C terminal (RecO_C)

(82-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

55.061

99.597

0.548

Multiple sequence alignment