Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   EQK03_RS05670 Genome accession   NZ_CP040342
Coordinates   1123600..1123884 (+) Length   94 a.a.
NCBI ID   WP_000843036.1    Uniprot ID   A0A9W5VII1
Organism   Bacillus cereus strain DLOU-Weihai     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1118600..1128884
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQK03_RS05655 rnmV 1119427..1119984 (-) 558 WP_000692835.1 ribonuclease M5 -
  EQK03_RS05660 - 1120199..1120966 (-) 768 WP_006915843.1 TatD family hydrolase -
  EQK03_RS05665 metG 1121133..1123142 (-) 2010 WP_071732546.1 methionine--tRNA ligase -
  EQK03_RS05670 abrB 1123600..1123884 (+) 285 WP_000843036.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  EQK03_RS05675 rsmI 1123905..1124780 (-) 876 WP_000267821.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  EQK03_RS05680 - 1124749..1125039 (-) 291 WP_000414350.1 GIY-YIG nuclease family protein -
  EQK03_RS05685 - 1125026..1125766 (-) 741 WP_001055366.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  EQK03_RS05690 yabA 1125849..1126199 (-) 351 WP_000412063.1 DNA replication initiation control protein YabA -
  EQK03_RS05695 - 1126214..1127041 (-) 828 WP_000272429.1 stage 0 sporulation family protein -
  EQK03_RS05700 holB 1127047..1128029 (-) 983 Protein_1058 DNA polymerase III subunit delta' -
  EQK03_RS05705 tmk 1128065..1128691 (-) 627 WP_000677218.1 dTMP kinase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10490.17 Da        Isoelectric Point: 4.7174

>NTDB_id=363444 EQK03_RS05670 WP_000843036.1 1123600..1123884(+) (abrB) [Bacillus cereus strain DLOU-Weihai]
MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDGNLSLAEGKIILSKEGAE
QILNELQDYIETAK

Nucleotide


Download         Length: 285 bp        

>NTDB_id=363444 EQK03_RS05670 WP_000843036.1 1123600..1123884(+) (abrB) [Bacillus cereus strain DLOU-Weihai]
ATGAAATCTACTGGTATTGTTCGTAAAGTTGATGAATTAGGTCGTGTAGTAATTCCAATCGAATTACGCCGTACTTTAGG
TATTGCAGAAAAGGATGCTCTTGAAATCTATGTTGATGACGAAAAAATCATCTTAAAGAAATATAAACCAAACATGACTT
GCCAAGTAACTGGTGAAGTATCTGACGGTAACCTTTCTTTAGCTGAAGGTAAAATCATCTTAAGCAAAGAAGGCGCTGAG
CAAATCTTAAACGAACTTCAAGATTATATCGAAACAGCAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-89)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

85.106

100

0.851

Multiple sequence alignment