Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   SYNGTS_RS05860 Genome accession   NC_017277
Coordinates   1253600..1254556 (-) Length   318 a.a.
NCBI ID   WP_010872341.1    Uniprot ID   -
Organism   Synechocystis sp. PCC 6803     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 1248600..1259556
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SYNGTS_RS05840 (SYNGTS_1131) pta 1249259..1251352 (+) 2094 WP_010872337.1 phosphate acetyltransferase -
  SYNGTS_RS05845 (SYNGTS_1132) - 1251410..1252024 (-) 615 WP_010872338.1 hypothetical protein -
  SYNGTS_RS05850 (SYNGTS_1133) sfsA 1252086..1252799 (-) 714 WP_010872339.1 DNA/RNA nuclease SfsA -
  SYNGTS_RS05855 (SYNGTS_1134) - 1252853..1253440 (-) 588 WP_010872340.1 DUF1997 domain-containing protein -
  SYNGTS_RS05860 (SYNGTS_1135) rpoS 1253600..1254556 (-) 957 WP_010872341.1 RNA polymerase sigma factor, RpoD/SigA family Regulator
  SYNGTS_RS05865 - 1254654..1254857 (+) 204 WP_020861660.1 hypothetical protein -
  SYNGTS_RS05870 (SYNGTS_1136) - 1254942..1255568 (-) 627 WP_010872342.1 7-carboxy-7-deazaguanine synthase QueE -
  SYNGTS_RS05875 (SYNGTS_1137) murD 1255722..1257080 (-) 1359 WP_010872343.1 UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase -
  SYNGTS_RS05880 (SYNGTS_1138) - 1257261..1258568 (-) 1308 WP_010872344.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 318 a.a.        Molecular weight: 36341.79 Da        Isoelectric Point: 9.6533

>NTDB_id=36343 SYNGTS_RS05860 WP_010872341.1 1253600..1254556(-) (rpoS) [Synechocystis sp. PCC 6803]
MTARTSPDSVRAYLREIGRVPLLTHEEEIVYAKQIQQVVSLNEIKKSLAEGKDGEPVSPSEWAKAADLSIRELEKAIKEG
ERAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWWIRQAITRAIAEKSRTIRL
PIHITEKLNKIKKAQRQLSQEKGRAASIAELAEHLELTPKQVREYLERSRHPLSLDLRVGDNQDTELGDLLEDDGPLPED
FATYASLQLDLDSLMAELTPQQREVLILRFGLNDGQPLTLASIGSMLSISRERVRQIEREALNKLRKRKSMIQEYLAS

Nucleotide


Download         Length: 957 bp        

>NTDB_id=36343 SYNGTS_RS05860 WP_010872341.1 1253600..1254556(-) (rpoS) [Synechocystis sp. PCC 6803]
ATGACTGCCAGAACCAGCCCCGATTCCGTCCGTGCCTATCTCAGAGAAATTGGTCGTGTGCCCCTGCTCACCCATGAGGA
AGAGATTGTTTATGCTAAGCAAATCCAACAGGTTGTTAGCCTCAACGAAATCAAGAAGTCTTTGGCCGAAGGCAAGGATG
GCGAGCCGGTTTCCCCCAGCGAGTGGGCTAAGGCGGCCGATTTGTCCATTCGAGAATTAGAAAAAGCCATCAAGGAAGGG
GAACGGGCCAAGCGCAAAATGGTGGAGGCTAACCTCCGGCTGGTGGTATCTGTCGCCAAAAAATATCTCAAGCGTAATCT
AGACCTACTTGACCTCATCCAAGAGGGCACCATTGGTATGCAACGGGGGGTAGAGAAGTTTGACCCCACCAAGGGTTATC
GGTTTTCCACCTATGCCTATTGGTGGATCCGCCAGGCCATCACCAGGGCGATCGCCGAAAAGAGCCGCACCATCCGTTTA
CCAATCCACATTACGGAAAAGTTAAACAAAATTAAAAAAGCCCAAAGACAACTTTCCCAGGAAAAGGGTCGGGCCGCTTC
CATTGCGGAATTGGCGGAACATCTAGAATTAACTCCCAAGCAAGTGCGGGAATATTTGGAGCGCTCTCGCCATCCCCTTT
CCTTGGATTTACGGGTGGGGGACAACCAAGATACTGAGTTAGGGGATTTGTTGGAAGACGACGGTCCTTTACCAGAGGAT
TTTGCCACCTATGCCTCCCTACAGTTGGATCTCGATAGCCTGATGGCGGAATTAACGCCCCAACAACGGGAAGTTCTCAT
TCTCCGCTTTGGCCTCAATGATGGCCAACCCCTAACCTTGGCGAGCATTGGCTCCATGCTCAGCATCAGTCGGGAACGGG
TGCGGCAGATTGAGCGGGAAGCCCTAAATAAATTACGCAAACGCAAGTCCATGATCCAGGAATATTTAGCTAGCTAA

Domains

Predicted by InterProScan.

Sigma-70 region 3 (Sigma70_r3)

(166-240)

Sigma-70 region 2 (Sigma70_r2)

(87-156)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(8-37)

Sigma-70, region 4 (Sigma70_r4)

(254-307)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

38.284

95.283

0.365

Multiple sequence alignment