Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   EUC38_RS15230 Genome accession   NZ_CP040340
Coordinates   3010845..3011126 (+) Length   93 a.a.
NCBI ID   WP_000843025.1    Uniprot ID   A0AAN4KMT0
Organism   Bacillus cereus strain DLOU-Tangshan     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 3005845..3016126
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EUC38_RS15195 - 3006395..3006925 (-) 531 WP_000627263.1 GNAT family protein -
  EUC38_RS15200 - 3007079..3007501 (+) 423 WP_000801155.1 hypothetical protein -
  EUC38_RS15205 - 3008190..3008645 (-) 456 WP_000796401.1 hypothetical protein -
  EUC38_RS15210 - 3008918..3009235 (+) 318 WP_000802566.1 hypothetical protein -
  EUC38_RS30580 - 3009252..3010192 (+) 941 Protein_2956 hypothetical protein -
  EUC38_RS15220 - 3010195..3010341 (+) 147 WP_000790088.1 BC1881 family protein -
  EUC38_RS15225 - 3010468..3010848 (+) 381 WP_000659531.1 hypothetical protein -
  EUC38_RS15230 abrB 3010845..3011126 (+) 282 WP_000843025.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  EUC38_RS15235 - 3011128..3011325 (+) 198 WP_001294613.1 hypothetical protein -
  EUC38_RS15240 - 3011322..3011519 (+) 198 WP_000678671.1 hypothetical protein -
  EUC38_RS15245 - 3011516..3012721 (-) 1206 WP_000214049.1 protein kinase family protein -
  EUC38_RS30585 - 3012878..3013204 (+) 327 WP_000200018.1 hypothetical protein -
  EUC38_RS15255 - 3013464..3013853 (+) 390 WP_000196742.1 hypothetical protein -
  EUC38_RS15260 - 3014252..3014815 (+) 564 WP_000873651.1 recombinase family protein -
  EUC38_RS15265 - 3015009..3015452 (-) 444 WP_000185755.1 hypothetical protein -
  EUC38_RS15270 - 3015453..3016094 (-) 642 WP_001083941.1 serine protease -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10244.87 Da        Isoelectric Point: 4.6282

>NTDB_id=363412 EUC38_RS15230 WP_000843025.1 3010845..3011126(+) (abrB) [Bacillus cereus strain DLOU-Tangshan]
MKSTGIIRNIDPLGRIVVPMELRRTLGIQVKDPMEIFVDGESIILQKYNPNNSCQITGEVSEENIELAGGKLVLSPEGVD
QVLAELEARLKGR

Nucleotide


Download         Length: 282 bp        

>NTDB_id=363412 EUC38_RS15230 WP_000843025.1 3010845..3011126(+) (abrB) [Bacillus cereus strain DLOU-Tangshan]
ATGAAATCAACAGGTATCATTCGTAACATTGATCCATTAGGACGTATTGTGGTTCCGATGGAATTACGCCGTACATTAGG
TATCCAGGTAAAGGATCCTATGGAGATTTTCGTAGATGGTGAATCTATTATTCTACAAAAATATAATCCTAATAACTCTT
GCCAAATTACAGGCGAGGTTTCAGAAGAAAATATTGAACTAGCTGGCGGTAAACTCGTGCTAAGTCCTGAAGGGGTTGAT
CAGGTATTAGCGGAACTCGAAGCACGTTTGAAGGGGCGATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(54-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(14-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

62.637

97.849

0.613

Multiple sequence alignment