Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   EUC38_RS03280 Genome accession   NZ_CP040340
Coordinates   657021..657305 (-) Length   94 a.a.
NCBI ID   WP_000843036.1    Uniprot ID   A0A9W5VII1
Organism   Bacillus cereus strain DLOU-Tangshan     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 652021..662305
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EUC38_RS03245 tmk 652213..652839 (+) 627 WP_000677216.1 dTMP kinase -
  EUC38_RS03250 holB 652875..653858 (+) 984 WP_000169561.1 DNA polymerase III subunit delta' -
  EUC38_RS03255 - 653864..654691 (+) 828 WP_000272429.1 stage 0 sporulation family protein -
  EUC38_RS03260 yabA 654706..655056 (+) 351 WP_000412063.1 DNA replication initiation control protein YabA -
  EUC38_RS03265 - 655139..655879 (+) 741 WP_001055366.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  EUC38_RS03270 - 655866..656156 (+) 291 WP_000414354.1 GIY-YIG nuclease family protein -
  EUC38_RS03275 rsmI 656125..657000 (+) 876 WP_000267821.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  EUC38_RS03280 abrB 657021..657305 (-) 285 WP_000843036.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  EUC38_RS03285 metG 657791..659773 (+) 1983 WP_000134132.1 methionine--tRNA ligase -
  EUC38_RS03290 - 659940..660707 (+) 768 WP_000895851.1 TatD family hydrolase -
  EUC38_RS03295 rnmV 660922..661479 (+) 558 WP_000692835.1 ribonuclease M5 -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10490.17 Da        Isoelectric Point: 4.7174

>NTDB_id=363390 EUC38_RS03280 WP_000843036.1 657021..657305(-) (abrB) [Bacillus cereus strain DLOU-Tangshan]
MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDGNLSLAEGKIILSKEGAE
QILNELQDYIETAK

Nucleotide


Download         Length: 285 bp        

>NTDB_id=363390 EUC38_RS03280 WP_000843036.1 657021..657305(-) (abrB) [Bacillus cereus strain DLOU-Tangshan]
ATGAAATCTACTGGTATTGTTCGTAAAGTTGATGAATTAGGTCGTGTAGTAATTCCAATCGAATTACGCCGTACTTTAGG
TATTGCAGAAAAGGACGCTCTTGAAATCTATGTTGATGACGAAAAAATCATCTTAAAGAAATATAAACCAAACATGACTT
GCCAAGTAACTGGTGAAGTATCTGACGGTAACCTTTCTTTAGCTGAAGGTAAAATCATCTTAAGCAAAGAAGGCGCTGAG
CAAATCTTAAACGAACTTCAAGATTATATCGAAACAGCAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-89)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

85.106

100

0.851

Multiple sequence alignment