Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   EUC40_RS25895 Genome accession   NZ_CP040336
Coordinates   5115390..5116517 (-) Length   375 a.a.
NCBI ID   WP_000470756.1    Uniprot ID   A0A7V7SBK4
Organism   Bacillus luti strain FJ     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5110390..5121517
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EUC40_RS25885 gyrA 5110868..5113339 (-) 2472 WP_001282869.1 DNA gyrase subunit A -
  EUC40_RS25890 gyrB 5113428..5115350 (-) 1923 WP_000372377.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  EUC40_RS25895 recF 5115390..5116517 (-) 1128 WP_000470756.1 DNA replication/repair protein RecF Machinery gene
  EUC40_RS25900 yaaA 5116530..5116742 (-) 213 WP_000821362.1 S4 domain-containing protein YaaA -
  EUC40_RS25905 dnaN 5116870..5118009 (-) 1140 WP_156576873.1 DNA polymerase III subunit beta -
  EUC40_RS25910 dnaA 5118188..5119528 (-) 1341 WP_000428019.1 chromosomal replication initiator protein DnaA -
  EUC40_RS25915 rpmH 5120093..5120227 (+) 135 WP_000831901.1 50S ribosomal protein L34 -
  EUC40_RS25920 rnpA 5120304..5120651 (+) 348 WP_000728894.1 ribonuclease P protein component -
  EUC40_RS25925 spoIIIJ 5120704..5121471 (+) 768 WP_000726757.1 YidC family membrane integrase SpoIIIJ -

Sequence

Protein


Download         Length: 375 a.a.        Molecular weight: 43362.71 Da        Isoelectric Point: 6.9851

>NTDB_id=363376 EUC40_RS25895 WP_000470756.1 5115390..5116517(-) (recF) [Bacillus luti strain FJ]
MFISEIQLKNYRNYEKLELSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDRELVRWDEEFGQIKGKLQKRNSS
LSLELNISKKGKKAKLNQLEQQKLSQYIGVMNVVMFAPEDLNLVKGSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQR
NHLLKKMQGNSKNEETMLDVFTLQLIEHGTKILRKRFEFLHLLQEWAAPIHRGISRGLEELEIVYKPSVDVSESMDLSKI
KEVYYESFQSVKQREIFRGTTLIGPHRDDLQFFVNSKNVQVFGSQGQQRTTALSLKLAEIELIYSEVKEYPILLLDDVLS
ELDDYRQSHLLNTIQGKVQTFVTTTSVDGIEHETLKEAKTIHVTNGTVDCEIDRA

Nucleotide


Download         Length: 1128 bp        

>NTDB_id=363376 EUC40_RS25895 WP_000470756.1 5115390..5116517(-) (recF) [Bacillus luti strain FJ]
TTGTTTATTTCAGAAATACAATTAAAAAACTATCGCAATTATGAAAAGTTAGAGCTTTCCTTTGAAGATAAGGTAAATGT
AATTATCGGCGAAAATGCACAAGGGAAAACAAATTTGATGGAAGCTATTTATGTTTTAGCGATGGCAAAATCTCATAGAA
CCTCTAATGATCGTGAGCTTGTCCGCTGGGATGAAGAATTCGGTCAAATTAAAGGGAAATTACAAAAGAGAAATAGTTCT
TTGTCTTTGGAATTAAATATTTCGAAAAAAGGTAAAAAGGCAAAATTAAATCAACTTGAACAACAGAAATTAAGTCAATA
TATTGGCGTGATGAATGTTGTCATGTTTGCCCCAGAAGATTTAAATCTTGTAAAAGGAAGCCCTCAAGTAAGAAGACGCT
TTTTAGATATGGAATTAGGTCAAATAGCTCCGGTCTATTTGTATGAATTAAGTCAATATCAAAAAGTGCTCACGCAACGA
AATCACTTGCTGAAGAAGATGCAAGGGAATAGTAAGAATGAGGAAACGATGTTGGATGTATTTACACTTCAACTTATTGA
GCATGGTACAAAAATATTGCGAAAACGGTTTGAATTTTTGCATTTACTACAAGAATGGGCAGCTCCAATTCATCGCGGTA
TAAGCCGTGGATTAGAAGAATTAGAAATTGTCTATAAACCAAGTGTAGATGTATCAGAATCAATGGATTTGTCGAAAATA
AAAGAAGTATACTATGAAAGTTTTCAATCTGTGAAACAACGTGAAATTTTCCGTGGTACGACTTTAATTGGTCCTCATCG
TGATGATTTACAATTCTTCGTTAATAGTAAAAATGTTCAAGTCTTTGGTTCGCAAGGACAACAACGAACAACCGCACTGT
CCCTAAAATTAGCTGAAATTGAATTGATTTACTCAGAAGTTAAGGAATATCCGATTCTTTTATTGGATGATGTATTATCA
GAGTTAGATGATTATCGTCAATCACATCTGTTAAATACAATTCAAGGAAAAGTGCAAACATTTGTGACAACGACGAGTGT
CGACGGAATTGAACACGAAACGTTAAAAGAAGCGAAAACAATTCATGTAACGAACGGCACGGTAGATTGTGAAATAGATA
GGGCATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-348)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7V7SBK4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

65.761

98.133

0.645

Multiple sequence alignment