Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   EUC40_RS25695 Genome accession   NZ_CP040336
Coordinates   5078833..5079117 (+) Length   94 a.a.
NCBI ID   WP_000843036.1    Uniprot ID   A0A9W5VII1
Organism   Bacillus luti strain FJ     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 5073833..5084117
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EUC40_RS25680 rnmV 5074622..5075179 (-) 558 WP_000692830.1 ribonuclease M5 -
  EUC40_RS25685 - 5075396..5076163 (-) 768 WP_156576864.1 TatD family hydrolase -
  EUC40_RS25690 metG 5076330..5078312 (-) 1983 WP_242660448.1 methionine--tRNA ligase -
  EUC40_RS25695 abrB 5078833..5079117 (+) 285 WP_000843036.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  EUC40_RS25700 rsmI 5079138..5080013 (-) 876 WP_156576865.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  EUC40_RS25705 - 5079982..5080272 (-) 291 WP_156576974.1 GIY-YIG nuclease family protein -
  EUC40_RS25710 - 5080259..5080999 (-) 741 WP_071710674.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  EUC40_RS25715 yabA 5081120..5081470 (-) 351 WP_000412062.1 DNA replication initiation control protein YabA -
  EUC40_RS25720 - 5081485..5082312 (-) 828 WP_000272429.1 stage 0 sporulation family protein -
  EUC40_RS25725 holB 5082318..5083301 (-) 984 WP_156576866.1 DNA polymerase III subunit delta' -
  EUC40_RS25730 tmk 5083337..5083963 (-) 627 WP_071710676.1 dTMP kinase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10490.17 Da        Isoelectric Point: 4.7174

>NTDB_id=363374 EUC40_RS25695 WP_000843036.1 5078833..5079117(+) (abrB) [Bacillus luti strain FJ]
MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDGNLSLAEGKIILSKEGAE
QILNELQDYIETAK

Nucleotide


Download         Length: 285 bp        

>NTDB_id=363374 EUC40_RS25695 WP_000843036.1 5078833..5079117(+) (abrB) [Bacillus luti strain FJ]
ATGAAATCTACTGGTATCGTTCGTAAAGTTGATGAATTAGGTCGTGTGGTAATTCCAATCGAATTACGCCGTACTTTAGG
TATTGCAGAAAAGGATGCTCTTGAAATCTACGTTGATGACGAGAAAATCATCTTAAAAAAATATAAGCCAAACATGACTT
GCCAAGTAACTGGTGAAGTATCTGATGGTAACCTATCTTTAGCTGAAGGTAAAATTATCTTAAGCAAAGAAGGCGCTGAG
CAAATCTTAAACGAACTTCAAGATTATATCGAAACAGCAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-89)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

85.106

100

0.851

Multiple sequence alignment