Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   EUC40_RS19505 Genome accession   NZ_CP040336
Coordinates   3845255..3845578 (+) Length   107 a.a.
NCBI ID   WP_000578876.1    Uniprot ID   A0A7V7V6B0
Organism   Bacillus luti strain FJ     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 3840255..3850578
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EUC40_RS19490 - 3840656..3842023 (-) 1368 WP_156576963.1 aldehyde dehydrogenase -
  EUC40_RS19495 inhA1 3842298..3844685 (-) 2388 WP_156576310.1 M6 family metalloprotease immune inhibitor InhA1 -
  EUC40_RS19500 - 3845030..3845164 (+) 135 WP_000276216.1 anti-repressor SinI family protein -
  EUC40_RS19505 sinR 3845255..3845578 (+) 324 WP_000578876.1 helix-turn-helix domain-containing protein Regulator
  EUC40_RS19510 - 3845653..3846246 (-) 594 WP_156576311.1 CalY family protein -
  EUC40_RS19515 - 3846536..3847372 (-) 837 WP_156576312.1 DUF4047 domain-containing protein -
  EUC40_RS19520 - 3847490..3848077 (-) 588 WP_071709923.1 TasA family protein -
  EUC40_RS19525 - 3848140..3848709 (-) 570 WP_071709924.1 signal peptidase I -
  EUC40_RS19530 - 3848906..3850192 (-) 1287 WP_156576313.1 D-alanyl-D-alanine carboxypeptidase family protein -
  EUC40_RS19535 - 3850346..3850573 (-) 228 WP_000251865.1 hypothetical protein -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12329.16 Da        Isoelectric Point: 8.5614

>NTDB_id=363358 EUC40_RS19505 WP_000578876.1 3845255..3845578(+) (sinR) [Bacillus luti strain FJ]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTLLHDETTKEANLDSEWTQLV
KDAMNSGVSKEQFREFLEFTKWKQDHK

Nucleotide


Download         Length: 324 bp        

>NTDB_id=363358 EUC40_RS19505 WP_000578876.1 3845255..3845578(+) (sinR) [Bacillus luti strain FJ]
ATGATTGGAGAACGTATAAAACGCCTTCGTTTACAAAAAGGCATTTCATTAACTGAACTTGCCGAAAAAGCTGGTGTTGC
TAAATCTTACATTAGTTCGATAGAACGAAATTTGCAAAAAAACCCTTCCATTCAGTTTCTTGAAAAAATCGCAGCAGTTC
TACAAATTCCAGTTGATACTTTACTTCATGATGAAACAACAAAGGAAGCTAATCTAGACTCCGAATGGACACAGCTCGTC
AAAGATGCGATGAACTCCGGTGTCTCCAAAGAACAATTTCGTGAATTTCTTGAATTTACAAAATGGAAGCAAGATCACAA
ATAA

Domains

Predicted by InterproScan.

Anti-repressor SinI (SinI)

(72-99)

Helix-turn-helix (HTH_3)

(6-60)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7V7V6B0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

66.972

100

0.682

Multiple sequence alignment