Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   EUC40_RS16315 Genome accession   NZ_CP040336
Coordinates   3196261..3196548 (-) Length   95 a.a.
NCBI ID   WP_064474212.1    Uniprot ID   A0A1A9PY90
Organism   Bacillus luti strain FJ     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 3191261..3201548
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EUC40_RS16290 - 3192693..3193040 (+) 348 WP_002118502.1 DUF4257 domain-containing protein -
  EUC40_RS16295 - 3193125..3193349 (+) 225 WP_156575994.1 hypothetical protein -
  EUC40_RS16300 - 3193679..3194614 (-) 936 WP_156575995.1 aldo/keto reductase -
  EUC40_RS16305 - 3194723..3195031 (+) 309 WP_156575996.1 helix-turn-helix transcriptional regulator -
  EUC40_RS16310 - 3195071..3196021 (-) 951 WP_156575997.1 serine protease -
  EUC40_RS16315 abrB 3196261..3196548 (-) 288 WP_064474212.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  EUC40_RS16320 - 3196664..3198544 (-) 1881 WP_156575998.1 ABC transporter permease -
  EUC40_RS16325 nadE 3198814..3199632 (+) 819 WP_156575999.1 ammonia-dependent NAD(+) synthetase -
  EUC40_RS16330 - 3199677..3200138 (-) 462 WP_156576000.1 NUDIX hydrolase -
  EUC40_RS16335 - 3200169..3200366 (-) 198 WP_071712537.1 DUF4083 domain-containing protein -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10619.36 Da        Isoelectric Point: 6.9795

>NTDB_id=363355 EUC40_RS16315 WP_064474212.1 3196261..3196548(-) (abrB) [Bacillus luti strain FJ]
MKATGVIRKVDELGRIVIPKELRDVLGIQIKSPLEIFVEEDKVILQKYQPYNACQITGDVSNQNISLANGNITVSIDGAK
HLIKEIEKFLNKSEV

Nucleotide


Download         Length: 288 bp        

>NTDB_id=363355 EUC40_RS16315 WP_064474212.1 3196261..3196548(-) (abrB) [Bacillus luti strain FJ]
ATGAAAGCAACAGGAGTTATTCGAAAAGTAGACGAACTAGGACGAATTGTTATTCCTAAAGAATTACGAGATGTATTAGG
GATACAAATCAAATCACCACTTGAAATTTTCGTAGAAGAAGACAAAGTAATTTTACAAAAATATCAACCTTACAATGCTT
GTCAAATAACAGGTGATGTTTCAAATCAGAACATATCATTAGCAAATGGAAACATTACTGTTAGTATAGATGGAGCGAAA
CATTTAATAAAAGAGATAGAGAAATTTTTAAACAAGAGTGAGGTTTAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1A9PY90

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

54.444

94.737

0.516

Multiple sequence alignment