Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   EUC39_RS25175 Genome accession   NZ_CP040334
Coordinates   5041216..5041539 (+) Length   107 a.a.
NCBI ID   WP_000578885.1    Uniprot ID   A0A9W5VG71
Organism   Bacillus cereus strain DLOU-Changhai     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 5036216..5046539
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EUC39_RS25160 - 5036730..5038097 (-) 1368 WP_069355257.1 aldehyde dehydrogenase -
  EUC39_RS25165 inhA1 5038269..5040659 (-) 2391 WP_106822706.1 M6 family metalloprotease immune inhibitor InhA1 -
  EUC39_RS25170 - 5041002..5041136 (+) 135 WP_000276219.1 anti-repressor SinI family protein -
  EUC39_RS25175 sinR 5041216..5041539 (+) 324 WP_000578885.1 helix-turn-helix domain-containing protein Regulator
  EUC39_RS25180 calY 5041612..5042205 (-) 594 WP_000053715.1 biofilm matrix protein CalY -
  EUC39_RS25185 - 5042550..5043407 (-) 858 WP_145959691.1 DUF4047 domain-containing protein -
  EUC39_RS25190 - 5043542..5044129 (-) 588 WP_000172852.1 CalY family protein -
  EUC39_RS25195 sipW 5044190..5044759 (-) 570 WP_000767792.1 signal peptidase I SipW -
  EUC39_RS25200 - 5044950..5046236 (-) 1287 WP_106822710.1 D-alanyl-D-alanine carboxypeptidase family protein -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12349.19 Da        Isoelectric Point: 9.6244

>NTDB_id=363319 EUC39_RS25175 WP_000578885.1 5041216..5041539(+) (sinR) [Bacillus cereus strain DLOU-Changhai]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTLLHDETTKETNLDSEWTQLV
KDAMNSGVSKEQFREFLEFTKWKQNQK

Nucleotide


Download         Length: 324 bp        

>NTDB_id=363319 EUC39_RS25175 WP_000578885.1 5041216..5041539(+) (sinR) [Bacillus cereus strain DLOU-Changhai]
ATGATTGGAGAACGTATAAAACGCCTTCGTTTACAAAAAGGGATTTCATTAACTGAACTTGCCGAAAAAGCTGGCGTTGC
TAAATCTTACATTAGTTCTATAGAACGAAATTTACAAAAAAACCCTTCCATTCAGTTTCTTGAAAAAATCGCAGCAGTTC
TACAAATTCCAGTTGATACTTTACTTCATGATGAAACAACAAAGGAAACTAACCTAGACTCCGAATGGACACAACTCGTT
AAAGATGCAATGAACTCTGGTGTCTCCAAAGAACAATTTCGTGAATTTCTTGAATTTACAAAGTGGAAGCAAAATCAAAA
ATAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-60)

Anti-repressor SinI (SinI)

(72-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

67.89

100

0.692

Multiple sequence alignment