Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   EUC39_RS23890 Genome accession   NZ_CP040334
Coordinates   4799363..4799965 (+) Length   200 a.a.
NCBI ID   WP_000155599.1    Uniprot ID   A0A9W5VMY9
Organism   Bacillus cereus strain DLOU-Changhai     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4794363..4804965
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EUC39_RS23850 gpsB 4794630..4794965 (-) 336 WP_000622431.1 cell division regulator GpsB -
  EUC39_RS23855 - 4795063..4795617 (-) 555 WP_000862916.1 DUF1273 domain-containing protein -
  EUC39_RS23860 - 4795674..4796096 (-) 423 WP_000546292.1 CotD family spore coat protein -
  EUC39_RS23865 - 4796253..4796819 (-) 567 WP_157418195.1 YppG family protein -
  EUC39_RS23870 - 4796997..4797188 (+) 192 WP_000242652.1 YppF family protein -
  EUC39_RS23875 - 4797215..4797559 (-) 345 WP_000786937.1 YppE family protein -
  EUC39_RS23880 - 4797575..4797817 (-) 243 WP_001252034.1 hypothetical protein -
  EUC39_RS27775 - 4797903..4798082 (+) 180 WP_001987054.1 hypothetical protein -
  EUC39_RS23885 - 4798234..4799259 (-) 1026 WP_089170712.1 DUF2515 domain-containing protein -
  EUC39_RS23890 recU 4799363..4799965 (+) 603 WP_000155599.1 Holliday junction resolvase RecU Machinery gene
  EUC39_RS23895 - 4800032..4802725 (+) 2694 WP_157418196.1 PBP1A family penicillin-binding protein -
  EUC39_RS23900 - 4802751..4803269 (-) 519 WP_029441862.1 YpoC family protein -
  EUC39_RS23905 nth 4803273..4803920 (-) 648 WP_000933035.1 endonuclease III -
  EUC39_RS23910 dnaD 4803936..4804643 (-) 708 WP_000728542.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 23325.54 Da        Isoelectric Point: 9.4336

>NTDB_id=363317 EUC39_RS23890 WP_000155599.1 4799363..4799965(+) (recU) [Bacillus cereus strain DLOU-Changhai]
MTIRYPNGKRYNQASQPQKTPIKTHTYSNRGMSLEEELNETNQYYLTHNIACVHKKPTPLQIVKVDYPARSAAVVKEAYF
KQPSTTDYNGVYKGKYIDFEAKETKNKTSFPLQNFHLHQIEHMKQVVAHNGIAFVIIKFTLFDEFYLLDAKHIIAFWNRQ
NTGGRKSITKEEIEEHGSLLSCGYHPRIDYIRVLDTVYFS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=363317 EUC39_RS23890 WP_000155599.1 4799363..4799965(+) (recU) [Bacillus cereus strain DLOU-Changhai]
ATGACCATTCGTTACCCAAATGGAAAAAGGTATAATCAAGCTTCACAACCTCAAAAAACACCTATAAAAACACATACTTA
TAGTAATAGAGGTATGTCCCTTGAAGAGGAATTGAATGAAACAAATCAATATTACTTAACCCATAATATTGCATGTGTAC
ATAAAAAGCCTACACCTCTTCAAATTGTAAAAGTAGATTACCCCGCTCGAAGTGCTGCAGTGGTAAAAGAAGCGTATTTT
AAACAACCTTCTACGACAGATTACAACGGTGTATACAAAGGGAAATACATCGATTTTGAAGCAAAGGAAACAAAAAATAA
AACTAGTTTCCCACTTCAAAACTTCCACCTTCATCAAATAGAACATATGAAGCAAGTGGTTGCTCATAATGGAATTGCAT
TTGTCATTATTAAATTTACACTTTTTGATGAATTTTATTTATTAGATGCAAAACATATTATTGCATTTTGGAATCGTCAA
AATACAGGTGGACGCAAGTCGATTACGAAAGAAGAAATAGAAGAGCATGGATCCTTATTATCATGCGGTTATCACCCTCG
GATTGACTATATCCGTGTACTAGACACGGTTTATTTTTCGTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(30-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

63.5

100

0.635

Multiple sequence alignment